miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 7125 0.68 0.600215
Target:  5'- --uAGCgCCGGCCGAcuGaGCCGACGaaaCGUg -3'
miRNA:   3'- ccuUCG-GGCCGGUU--C-CGGCUGCg--GCG- -5'
24612 3' -61.6 NC_005264.1 + 7249 0.74 0.284795
Target:  5'- cGAGGaCuuGGCgGAGGUCGGCGCCa- -3'
miRNA:   3'- cCUUC-GggCCGgUUCCGGCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 7668 0.7 0.477856
Target:  5'- cGGAgGGCUCGGCCuccauGGGCuCGucCGUCGUg -3'
miRNA:   3'- -CCU-UCGGGCCGGu----UCCG-GCu-GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 8216 0.76 0.201733
Target:  5'- cGGAGaCgCGGCCAucGGCCGAaGCCGCa -3'
miRNA:   3'- cCUUC-GgGCCGGUu-CCGGCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 8782 0.66 0.696272
Target:  5'- cGGcGGGCgUCGGCCAGgacGGCCaGcgcuccucuucgaGCGCCGCu -3'
miRNA:   3'- -CC-UUCG-GGCCGGUU---CCGG-C-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 8937 0.68 0.571221
Target:  5'- cGGAacAGUuucUCGGCCuucGGGCCGGCcaacucGCUGCa -3'
miRNA:   3'- -CCU--UCG---GGCCGGu--UCCGGCUG------CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 11773 0.66 0.716279
Target:  5'- cGGgcGCCUGGCUcgcacuccGGGGCagcccgaGGCGguuCCGCa -3'
miRNA:   3'- -CCuuCGGGCCGG--------UUCCGg------CUGC---GGCG- -5'
24612 3' -61.6 NC_005264.1 + 11849 0.68 0.587618
Target:  5'- cGGAcacgcGGCCCGucGCCGccacucgcgagcucAGaGCCGA-GCCGCg -3'
miRNA:   3'- -CCU-----UCGGGC--CGGU--------------UC-CGGCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 12457 0.66 0.72006
Target:  5'- -aAGGCCCGGC--AGGCgucagcgaguucuugCGugGCCGg -3'
miRNA:   3'- ccUUCGGGCCGguUCCG---------------GCugCGGCg -5'
24612 3' -61.6 NC_005264.1 + 12644 0.66 0.686665
Target:  5'- cGAGGCCgccaaugUGGCUAuuaAGGCCGGC-CgGCa -3'
miRNA:   3'- cCUUCGG-------GCCGGU---UCCGGCUGcGgCG- -5'
24612 3' -61.6 NC_005264.1 + 13487 0.7 0.468913
Target:  5'- gGGAcAGCUCGGgaGAGGUCGACuuCCGCg -3'
miRNA:   3'- -CCU-UCGGGCCggUUCCGGCUGc-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 14862 0.67 0.668306
Target:  5'- aGAGGCuuG-CCAGGGCCauguacacuaGACGCgCGUc -3'
miRNA:   3'- cCUUCGggCcGGUUCCGG----------CUGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 15402 0.7 0.477856
Target:  5'- uGAGGUUgGGUCGcGGCCGGCGuaGCg -3'
miRNA:   3'- cCUUCGGgCCGGUuCCGGCUGCggCG- -5'
24612 3' -61.6 NC_005264.1 + 16416 0.66 0.715332
Target:  5'- gGGAGGCaagGGCCGcucgacugccgcgGGGCCuGC-CCGCg -3'
miRNA:   3'- -CCUUCGgg-CCGGU-------------UCCGGcUGcGGCG- -5'
24612 3' -61.6 NC_005264.1 + 16488 0.68 0.590521
Target:  5'- cGGuGGCCUgcggGGUCGAGGCaCGcCGgCGCa -3'
miRNA:   3'- -CCuUCGGG----CCGGUUCCG-GCuGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 17813 0.67 0.668306
Target:  5'- cGGuAGGCCCuGGCCAcGGCaaauuuaGCGCCa- -3'
miRNA:   3'- -CC-UUCGGG-CCGGUuCCGgc-----UGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 18371 0.67 0.642063
Target:  5'- gGGGAGCCCuGGUaaggauccaggcggaCAAcgaccaccguuccGGCCGGCGCagGCg -3'
miRNA:   3'- -CCUUCGGG-CCG---------------GUU-------------CCGGCUGCGg-CG- -5'
24612 3' -61.6 NC_005264.1 + 19304 0.68 0.590521
Target:  5'- aGGAGGCagCCGGacacaggcccCCAGGaaaGCCggaagGACGCCGCg -3'
miRNA:   3'- -CCUUCG--GGCC----------GGUUC---CGG-----CUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 19417 0.68 0.561627
Target:  5'- gGGAGGCgaGGCgCcGGG-UGugGCCGCg -3'
miRNA:   3'- -CCUUCGggCCG-GuUCCgGCugCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 20232 0.71 0.400716
Target:  5'- aGGuAGCCCGGCgu-GGCCauCGUCGCg -3'
miRNA:   3'- -CCuUCGGGCCGguuCCGGcuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.