miRNA display CGI


Results 1 - 20 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 1150 0.66 0.72571
Target:  5'- cGGGAcGaUCCGGCCGccAGucuGCCGGCG-CGCg -3'
miRNA:   3'- -CCUU-C-GGGCCGGU--UC---CGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 1449 0.68 0.561627
Target:  5'- cGGGAGCCagcacCGGCCAucGCCGGCGggGUu -3'
miRNA:   3'- -CCUUCGG-----GCCGGUucCGGCUGCggCG- -5'
24612 3' -61.6 NC_005264.1 + 1596 0.7 0.468913
Target:  5'- gGGAGGUUCugGGCCAGGGauacggGACGCCGg -3'
miRNA:   3'- -CCUUCGGG--CCGGUUCCgg----CUGCGGCg -5'
24612 3' -61.6 NC_005264.1 + 2396 0.68 0.600215
Target:  5'- aGGAGCCCGGCgccggccugccUAGGaagaaaGCgGAgGCCGCg -3'
miRNA:   3'- cCUUCGGGCCG-----------GUUC------CGgCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 2813 0.72 0.353155
Target:  5'- uGGGAGCCCaccuaaacggguuGGCgGAgGGCCGgucGCGCuCGCg -3'
miRNA:   3'- -CCUUCGGG-------------CCGgUU-CCGGC---UGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 2860 0.66 0.694354
Target:  5'- cGucGCCCGcugcggcugcgaucGaCCGGGGCgCGGCGCgGCg -3'
miRNA:   3'- cCuuCGGGC--------------C-GGUUCCG-GCUGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 2995 0.66 0.709638
Target:  5'- aGGAGGaCCGGCCGgcgcuaaucauccAGcGCCccccgcaguuugcaGCGCCGCu -3'
miRNA:   3'- -CCUUCgGGCCGGU-------------UC-CGGc-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 3687 0.66 0.716279
Target:  5'- cGggGCCUGGCgcggaAAGGgCGcacaguacuUGCCGCg -3'
miRNA:   3'- cCuuCGGGCCGg----UUCCgGCu--------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 3766 0.68 0.580854
Target:  5'- cGggGCgCUgcgGGCCcuuGGUCGAcCGCCGCc -3'
miRNA:   3'- cCuuCG-GG---CCGGuu-CCGGCU-GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 3823 0.75 0.226793
Target:  5'- -cGGGCCCGGgCGGGGCCGcaggaggaaauACGaCCGCa -3'
miRNA:   3'- ccUUCGGGCCgGUUCCGGC-----------UGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 3956 0.69 0.495987
Target:  5'- aGGAAcGuCCUGGCCGcgccGGCCGGCuuuaCCGCc -3'
miRNA:   3'- -CCUU-C-GGGCCGGUu---CCGGCUGc---GGCG- -5'
24612 3' -61.6 NC_005264.1 + 4022 0.67 0.6294
Target:  5'- aGggGCuuGGC--GGGCCGAUGCa-- -3'
miRNA:   3'- cCuuCGggCCGguUCCGGCUGCGgcg -5'
24612 3' -61.6 NC_005264.1 + 4674 0.7 0.468913
Target:  5'- gGGAAuaCCUGcGUCGGGGCgagUGGCGCCGCg -3'
miRNA:   3'- -CCUUc-GGGC-CGGUUCCG---GCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 5028 0.67 0.658601
Target:  5'- aGGAGGCCacgaGGUUccGcGUCGuggGCGCCGCc -3'
miRNA:   3'- -CCUUCGGg---CCGGuuC-CGGC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 5182 0.69 0.514422
Target:  5'- cGGAGGCCC--UCGcGGCCGAaacuucggaaGCCGCg -3'
miRNA:   3'- -CCUUCGGGccGGUuCCGGCUg---------CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 5481 0.66 0.706783
Target:  5'- --cAGCaucaCGGCCAGGGCC--CGCCa- -3'
miRNA:   3'- ccuUCGg---GCCGGUUCCGGcuGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 5820 0.68 0.580854
Target:  5'- --uAGUCCGGC---GGCgGugGCCGCc -3'
miRNA:   3'- ccuUCGGGCCGguuCCGgCugCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 6484 0.72 0.384677
Target:  5'- cGGGGuGCgCGGCCAucgaGGGCCGGuagccggucuUGCCGUa -3'
miRNA:   3'- -CCUU-CGgGCCGGU----UCCGGCU----------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 6656 0.72 0.36907
Target:  5'- cGGAAGCuCCGGCaGAGaucCUGGCGCCaGCa -3'
miRNA:   3'- -CCUUCG-GGCCGgUUCc--GGCUGCGG-CG- -5'
24612 3' -61.6 NC_005264.1 + 7065 0.73 0.331986
Target:  5'- --cGGCgCCGGCCGGcGCCGucGCGCUGCg -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGC--UGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.