miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 120177 0.66 0.72571
Target:  5'- cGGGAcGaUCCGGCCGccAGucuGCCGGCG-CGCg -3'
miRNA:   3'- -CCUU-C-GGGCCGGU--UC---CGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 62247 0.66 0.715332
Target:  5'- gGGAAGCC--GCCAcAGGCuguacaaCGACGgCGCu -3'
miRNA:   3'- -CCUUCGGgcCGGU-UCCG-------GCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 158564 0.66 0.715332
Target:  5'- --uGGCCa-GCCAugcAGGCCGAacagacuCGCUGCg -3'
miRNA:   3'- ccuUCGGgcCGGU---UCCGGCU-------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 2995 0.66 0.709638
Target:  5'- aGGAGGaCCGGCCGgcgcuaaucauccAGcGCCccccgcaguuugcaGCGCCGCu -3'
miRNA:   3'- -CCUUCgGGCCGGU-------------UC-CGGc-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 25475 0.66 0.706783
Target:  5'- uGGggGCgCCaGGCguacgggaaCGAGGCUagGAUGgCCGCg -3'
miRNA:   3'- -CCuuCG-GG-CCG---------GUUCCGG--CUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 5481 0.66 0.706783
Target:  5'- --cAGCaucaCGGCCAGGGCC--CGCCa- -3'
miRNA:   3'- ccuUCGg---GCCGGUUCCGGcuGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 39493 0.66 0.706783
Target:  5'- gGGcAGGCCUGcGCUguGGUgGACGCCa- -3'
miRNA:   3'- -CC-UUCGGGC-CGGuuCCGgCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 120760 0.66 0.69723
Target:  5'- gGGAuauCCCGGCgCA--GCUGACGCCacGCg -3'
miRNA:   3'- -CCUuc-GGGCCG-GUucCGGCUGCGG--CG- -5'
24612 3' -61.6 NC_005264.1 + 87747 0.66 0.69723
Target:  5'- cGgcGCCgGcGCCu--GCCGcaGCGCCGCg -3'
miRNA:   3'- cCuuCGGgC-CGGuucCGGC--UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 11773 0.66 0.716279
Target:  5'- cGGgcGCCUGGCUcgcacuccGGGGCagcccgaGGCGguuCCGCa -3'
miRNA:   3'- -CCuuCGGGCCGG--------UUCCGg------CUGC---GGCG- -5'
24612 3' -61.6 NC_005264.1 + 45386 0.66 0.716279
Target:  5'- aGGAgaaGGCgCGGCaaacgaugGAGGgCGGCGCCcuGCg -3'
miRNA:   3'- -CCU---UCGgGCCGg-------UUCCgGCUGCGG--CG- -5'
24612 3' -61.6 NC_005264.1 + 134846 0.66 0.716279
Target:  5'- uGGAucgaugGGCCgCGGCUAcGGCgGuCGUCGUc -3'
miRNA:   3'- -CCU------UCGG-GCCGGUuCCGgCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 27685 0.66 0.72571
Target:  5'- cGGcuGGCCuCuGCCuc-GCCGACGCuCGCu -3'
miRNA:   3'- -CCu-UCGG-GcCGGuucCGGCUGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 141471 0.66 0.72571
Target:  5'- cGggGCCucuuuccacCGGCCGAGGC-GGC-CCGg -3'
miRNA:   3'- cCuuCGG---------GCCGGUUCCGgCUGcGGCg -5'
24612 3' -61.6 NC_005264.1 + 120719 0.66 0.72571
Target:  5'- cGGcGGUCgGGCgGAGgacgguGCCGGCGaCUGCg -3'
miRNA:   3'- -CCuUCGGgCCGgUUC------CGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 85034 0.66 0.72571
Target:  5'- ---cGUCCGcGCCGucaauGCCGucuGCGCCGCg -3'
miRNA:   3'- ccuuCGGGC-CGGUuc---CGGC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 67471 0.66 0.72571
Target:  5'- ---cGCCUGGCaguuuGGCgGcacGCGCCGCc -3'
miRNA:   3'- ccuuCGGGCCGguu--CCGgC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 1150 0.66 0.72571
Target:  5'- cGGGAcGaUCCGGCCGccAGucuGCCGGCG-CGCg -3'
miRNA:   3'- -CCUU-C-GGGCCGGU--UC---CGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 12457 0.66 0.72006
Target:  5'- -aAGGCCCGGC--AGGCgucagcgaguucuugCGugGCCGg -3'
miRNA:   3'- ccUUCGGGCCGguUCCG---------------GCugCGGCg -5'
24612 3' -61.6 NC_005264.1 + 72251 0.66 0.716279
Target:  5'- ----aCCgCGGgCAAGGCgCGACcuGCCGCg -3'
miRNA:   3'- ccuucGG-GCCgGUUCCG-GCUG--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.