miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 64400 1.13 0.000582
Target:  5'- uGGAAGCCCGGCCAAGGCCGACGCCGCg -3'
miRNA:   3'- -CCUUCGGGCCGGUUCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 125683 0.72 0.36907
Target:  5'- cGGAAGCuCCGGCaGAGaucCUGGCGCCaGCa -3'
miRNA:   3'- -CCUUCG-GGCCGgUUCc--GGCUGCGG-CG- -5'
24612 3' -61.6 NC_005264.1 + 46404 0.71 0.408893
Target:  5'- aGGGccaGGUCCGcCgCGAGGCUGcACGCCGCc -3'
miRNA:   3'- -CCU---UCGGGCcG-GUUCCGGC-UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 120177 0.66 0.72571
Target:  5'- cGGGAcGaUCCGGCCGccAGucuGCCGGCG-CGCg -3'
miRNA:   3'- -CCUU-C-GGGCCGGU--UC---CGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 60896 0.76 0.197019
Target:  5'- ---cGCCgCGG-UggGGCCGACGCCGCc -3'
miRNA:   3'- ccuuCGG-GCCgGuuCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 155781 0.76 0.197019
Target:  5'- --cGGCgCCGGCCGGcGCCGuCGCCGCu -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 67445 0.75 0.225217
Target:  5'- uGAAGCCCcugcaccagcgcGGCCAgcucgugaaacccgAGGCCGGgcCGCCGCc -3'
miRNA:   3'- cCUUCGGG------------CCGGU--------------UCCGGCU--GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 122849 0.75 0.226793
Target:  5'- -cGGGCCCGGgCGGGGCCGcaggaggaaauACGaCCGCa -3'
miRNA:   3'- ccUUCGGGCCgGUUCCGGC-----------UGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 161280 0.73 0.322804
Target:  5'- --uAGUCCGGCCGGGGCCcgccuauugccggcGcggucaACGCCGCg -3'
miRNA:   3'- ccuUCGGGCCGGUUCCGG--------------C------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 21363 0.72 0.36907
Target:  5'- gGGccGCCuCGGCCGguggaaagAGGCCc-CGCCGCu -3'
miRNA:   3'- -CCuuCGG-GCCGGU--------UCCGGcuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 121839 0.72 0.353155
Target:  5'- uGGGAGCCCaccuaaacggguuGGCgGAgGGCCGgucGCGCuCGCg -3'
miRNA:   3'- -CCUUCGGG-------------CCGgUU-CCGGC---UGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 94662 0.73 0.317939
Target:  5'- -cAAGCCCaaacguaGCCGcGGCgGGCGCCGCa -3'
miRNA:   3'- ccUUCGGGc------CGGUuCCGgCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 154050 0.82 0.089747
Target:  5'- aGGAGCgCUGGCCGuccuGGCCGACGcCCGCc -3'
miRNA:   3'- cCUUCG-GGCCGGUu---CCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 69764 0.72 0.360672
Target:  5'- --uGGCCCuGCCAcgaauucGGGCgGAgGCCGCa -3'
miRNA:   3'- ccuUCGGGcCGGU-------UCCGgCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 154610 0.8 0.124249
Target:  5'- gGGGAGCUgcugCGGCUucGGCCGAUGgCCGCg -3'
miRNA:   3'- -CCUUCGG----GCCGGuuCCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 126276 0.74 0.284795
Target:  5'- cGAGGaCuuGGCgGAGGUCGGCGCCa- -3'
miRNA:   3'- cCUUC-GggCCGgUUCCGGCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 93797 0.72 0.36143
Target:  5'- cGGcGGCCgCGGCCAAGaGaUCGAcuCGCCGUg -3'
miRNA:   3'- -CCuUCGG-GCCGGUUC-C-GGCU--GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 125511 0.72 0.384677
Target:  5'- cGGGGuGCgCGGCCAucgaGGGCCGGuagccggucuUGCCGUa -3'
miRNA:   3'- -CCUU-CGgGCCGGU----UCCGGCU----------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 112498 0.77 0.174869
Target:  5'- gGGcuGCCgcaGGaCAAGGUCGACGCCGCg -3'
miRNA:   3'- -CCuuCGGg--CCgGUUCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 127243 0.76 0.201733
Target:  5'- cGGAGaCgCGGCCAucGGCCGAaGCCGCa -3'
miRNA:   3'- cCUUC-GgGCCGGUu-CCGGCUgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.