miRNA display CGI


Results 21 - 40 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 137410 0.71 0.433186
Target:  5'- aGGAGGCCCuggacugcuuGGCCGAguacuucGGCCuGGCGgUGCu -3'
miRNA:   3'- -CCUUCGGG----------CCGGUU-------CCGG-CUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 46404 0.71 0.408893
Target:  5'- aGGGccaGGUCCGcCgCGAGGCUGcACGCCGCc -3'
miRNA:   3'- -CCU---UCGGGCcG-GUUCCGGC-UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 94662 0.73 0.317939
Target:  5'- -cAAGCCCaaacguaGCCGcGGCgGGCGCCGCa -3'
miRNA:   3'- ccUUCGGGc------CGGUuCCGgCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 112498 0.77 0.174869
Target:  5'- gGGcuGCCgcaGGaCAAGGUCGACGCCGCg -3'
miRNA:   3'- -CCuuCGGg--CCgGUUCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 126695 0.7 0.477856
Target:  5'- cGGAgGGCUCGGCCuccauGGGCuCGucCGUCGUg -3'
miRNA:   3'- -CCU-UCGGGCCGGu----UCCG-GCu-GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 91894 0.7 0.468913
Target:  5'- uGGuuGGCCgCGGCagcgauGGGCgGGCGCgGCg -3'
miRNA:   3'- -CCu-UCGG-GCCGgu----UCCGgCUGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 125683 0.72 0.36907
Target:  5'- cGGAAGCuCCGGCaGAGaucCUGGCGCCaGCa -3'
miRNA:   3'- -CCUUCG-GGCCGgUUCc--GGCUGCGG-CG- -5'
24612 3' -61.6 NC_005264.1 + 154610 0.8 0.124249
Target:  5'- gGGGAGCUgcugCGGCUucGGCCGAUGgCCGCg -3'
miRNA:   3'- -CCUUCGG----GCCGGuuCCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 79896 0.7 0.446076
Target:  5'- -cAGGCCUGGUCuuugcgugcgcguGGCCGACGuCUGCg -3'
miRNA:   3'- ccUUCGGGCCGGuu-----------CCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 154050 0.82 0.089747
Target:  5'- aGGAGCgCUGGCCGuccuGGCCGACGcCCGCc -3'
miRNA:   3'- cCUUCG-GGCCGGUu---CCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 125511 0.72 0.384677
Target:  5'- cGGGGuGCgCGGCCAucgaGGGCCGGuagccggucuUGCCGUa -3'
miRNA:   3'- -CCUU-CGgGCCGGU----UCCGGCU----------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 63078 0.71 0.434038
Target:  5'- --cAGCUCGGCgAGGGCCGuCGCgGa -3'
miRNA:   3'- ccuUCGGGCCGgUUCCGGCuGCGgCg -5'
24612 3' -61.6 NC_005264.1 + 69764 0.72 0.360672
Target:  5'- --uGGCCCuGCCAcgaauucGGGCgGAgGCCGCa -3'
miRNA:   3'- ccuUCGGGcCGGU-------UCCGgCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 161280 0.73 0.322804
Target:  5'- --uAGUCCGGCCGGGGCCcgccuauugccggcGcggucaACGCCGCg -3'
miRNA:   3'- ccuUCGGGCCGGUUCCGG--------------C------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 67445 0.75 0.225217
Target:  5'- uGAAGCCCcugcaccagcgcGGCCAgcucgugaaacccgAGGCCGGgcCGCCGCc -3'
miRNA:   3'- cCUUCGGG------------CCGGU--------------UCCGGCU--GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 60896 0.76 0.197019
Target:  5'- ---cGCCgCGG-UggGGCCGACGCCGCc -3'
miRNA:   3'- ccuuCGG-GCCgGuuCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 122982 0.69 0.495987
Target:  5'- aGGAAcGuCCUGGCCGcgccGGCCGGCuuuaCCGCc -3'
miRNA:   3'- -CCUU-C-GGGCCGGUu---CCGGCUGc---GGCG- -5'
24612 3' -61.6 NC_005264.1 + 136056 0.7 0.477856
Target:  5'- uGGAAGCCCGcGUgcAGGaUCGAgucggauacCGCCGCg -3'
miRNA:   3'- -CCUUCGGGC-CGguUCC-GGCU---------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 123701 0.7 0.468913
Target:  5'- gGGAAuaCCUGcGUCGGGGCgagUGGCGCCGCg -3'
miRNA:   3'- -CCUUc-GGGC-CGGUUCCG---GCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 120623 0.7 0.468913
Target:  5'- gGGAGGUUCugGGCCAGGGauacggGACGCCGg -3'
miRNA:   3'- -CCUUCGGG--CCGGUUCCgg----CUGCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.