miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 154491 0.75 0.25444
Target:  5'- aGGAAGCCaCGGUUAAGGuCUGcggggcgcacAUGCCGCg -3'
miRNA:   3'- -CCUUCGG-GCCGGUUCC-GGC----------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 52435 0.75 0.25444
Target:  5'- aGAAGUaCUGGCuCGAGccuGCCGACGCCGUg -3'
miRNA:   3'- cCUUCG-GGCCG-GUUC---CGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 126276 0.74 0.284795
Target:  5'- cGAGGaCuuGGCgGAGGUCGGCGCCa- -3'
miRNA:   3'- cCUUC-GggCCGgUUCCGGCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 7249 0.74 0.284795
Target:  5'- cGAGGaCuuGGCgGAGGUCGGCGCCa- -3'
miRNA:   3'- cCUUC-GggCCGgUUCCGGCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 109374 0.74 0.28543
Target:  5'- gGGGAGUUCGGCCGucggaaccuguucuuGGCCGACG-UGCa -3'
miRNA:   3'- -CCUUCGGGCCGGUu--------------CCGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 66393 0.74 0.291199
Target:  5'- uGGAAGCCgcuaGGCuCAAGGuuGGCGCgGa -3'
miRNA:   3'- -CCUUCGGg---CCG-GUUCCggCUGCGgCg -5'
24612 3' -61.6 NC_005264.1 + 106998 0.73 0.311084
Target:  5'- aGAAGCCCugaGGCCcAGucaGCCG-CGCCGCc -3'
miRNA:   3'- cCUUCGGG---CCGGuUC---CGGCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 94516 0.73 0.317248
Target:  5'- --cAGCCguCGGCCAcgugggaGGGCagCGGCGCCGCa -3'
miRNA:   3'- ccuUCGG--GCCGGU-------UCCG--GCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 94662 0.73 0.317939
Target:  5'- -cAAGCCCaaacguaGCCGcGGCgGGCGCCGCa -3'
miRNA:   3'- ccUUCGGGc------CGGUuCCGgCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 161280 0.73 0.322804
Target:  5'- --uAGUCCGGCCGGGGCCcgccuauugccggcGcggucaACGCCGCg -3'
miRNA:   3'- ccuUCGGGCCGGUUCCGG--------------C------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 42253 0.73 0.322804
Target:  5'- --uAGUCCGGCCGGGGCCcgccuauugccggcGcggucaACGCCGCg -3'
miRNA:   3'- ccuUCGGGCCGGUUCCGG--------------C------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 7065 0.73 0.331986
Target:  5'- --cGGCgCCGGCCGGcGCCGucGCGCUGCg -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGC--UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 126092 0.73 0.331986
Target:  5'- --cGGCgCCGGCCGGcGCCGucGCGCUGCg -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGC--UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 80477 0.73 0.338455
Target:  5'- cGAAGUgcuCCGcuucgccGCCAAGGCCGAgagcgagaacauCGCCGCg -3'
miRNA:   3'- cCUUCG---GGC-------CGGUUCCGGCU------------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 44774 0.73 0.339179
Target:  5'- aGGu-GCCCGcGgCGAucguuGCCGACGCCGCg -3'
miRNA:   3'- -CCuuCGGGC-CgGUUc----CGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 102838 0.72 0.346484
Target:  5'- -uGGGCCgCGGCCAcgcGGCCGucuCGCuCGCg -3'
miRNA:   3'- ccUUCGG-GCCGGUu--CCGGCu--GCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 97260 0.72 0.346484
Target:  5'- uGGccGCCgGGCCuuGGCacgguaGugGCCGCu -3'
miRNA:   3'- -CCuuCGGgCCGGuuCCGg-----CugCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 116280 0.72 0.346484
Target:  5'- uGGAAGCCguggcgcgggCGGCUAcGGCUGugGCCu- -3'
miRNA:   3'- -CCUUCGG----------GCCGGUuCCGGCugCGGcg -5'
24612 3' -61.6 NC_005264.1 + 121839 0.72 0.353155
Target:  5'- uGGGAGCCCaccuaaacggguuGGCgGAgGGCCGgucGCGCuCGCg -3'
miRNA:   3'- -CCUUCGGG-------------CCGgUU-CCGGC---UGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 2813 0.72 0.353155
Target:  5'- uGGGAGCCCaccuaaacggguuGGCgGAgGGCCGgucGCGCuCGCg -3'
miRNA:   3'- -CCUUCGGG-------------CCGgUU-CCGGC---UGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.