miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 64400 1.13 0.000582
Target:  5'- uGGAAGCCCGGCCAAGGCCGACGCCGCg -3'
miRNA:   3'- -CCUUCGGGCCGGUUCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 35023 0.82 0.089747
Target:  5'- aGGAGCgCUGGCCGuccuGGCCGACGcCCGCc -3'
miRNA:   3'- cCUUCG-GGCCGGUu---CCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 154050 0.82 0.089747
Target:  5'- aGGAGCgCUGGCCGuccuGGCCGACGcCCGCc -3'
miRNA:   3'- cCUUCG-GGCCGGUu---CCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 154610 0.8 0.124249
Target:  5'- gGGGAGCUgcugCGGCUucGGCCGAUGgCCGCg -3'
miRNA:   3'- -CCUUCGG----GCCGGuuCCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 35583 0.8 0.124249
Target:  5'- gGGGAGCUgcugCGGCUucGGCCGAUGgCCGCg -3'
miRNA:   3'- -CCUUCGG----GCCGGuuCCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 133950 0.79 0.140543
Target:  5'- gGGAAGCuuGGCCGGGGUcuucgcgguggCGuuCGCCGCg -3'
miRNA:   3'- -CCUUCGggCCGGUUCCG-----------GCu-GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 25576 0.78 0.154589
Target:  5'- gGGAgcucuGGCCCauGGCCAaaugaauagcgccGGGCCGGCGuuGCg -3'
miRNA:   3'- -CCU-----UCGGG--CCGGU-------------UCCGGCUGCggCG- -5'
24612 3' -61.6 NC_005264.1 + 97665 0.78 0.166648
Target:  5'- -aAGGCCgCGGCCAuGGCCagagagGGCGCCGCc -3'
miRNA:   3'- ccUUCGG-GCCGGUuCCGG------CUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 112498 0.77 0.174869
Target:  5'- gGGcuGCCgcaGGaCAAGGUCGACGCCGCg -3'
miRNA:   3'- -CCuuCGGg--CCgGUUCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 36755 0.76 0.197019
Target:  5'- --cGGCgCCGGCCGGcGCCGuCGCCGCu -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 155781 0.76 0.197019
Target:  5'- --cGGCgCCGGCCGGcGCCGuCGCCGCu -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 60896 0.76 0.197019
Target:  5'- ---cGCCgCGG-UggGGCCGACGCCGCc -3'
miRNA:   3'- ccuuCGG-GCCgGuuCCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 8216 0.76 0.201733
Target:  5'- cGGAGaCgCGGCCAucGGCCGAaGCCGCa -3'
miRNA:   3'- cCUUC-GgGCCGGUu-CCGGCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 127243 0.76 0.201733
Target:  5'- cGGAGaCgCGGCCAucGGCCGAaGCCGCa -3'
miRNA:   3'- cCUUC-GgGCCGGUu-CCGGCUgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 67445 0.75 0.225217
Target:  5'- uGAAGCCCcugcaccagcgcGGCCAgcucgugaaacccgAGGCCGGgcCGCCGCc -3'
miRNA:   3'- cCUUCGGG------------CCGGU--------------UCCGGCU--GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 122849 0.75 0.226793
Target:  5'- -cGGGCCCGGgCGGGGCCGcaggaggaaauACGaCCGCa -3'
miRNA:   3'- ccUUCGGGCCgGUUCCGGC-----------UGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 3823 0.75 0.226793
Target:  5'- -cGGGCCCGGgCGGGGCCGcaggaggaaauACGaCCGCa -3'
miRNA:   3'- ccUUCGGGCCgGUUCCGGC-----------UGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 144255 0.75 0.243062
Target:  5'- aGGuGGCCUGGCUcgcugccuuGGGCCGGCggauGCCGCu -3'
miRNA:   3'- -CCuUCGGGCCGGu--------UCCGGCUG----CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 73303 0.75 0.248697
Target:  5'- cGGAcacuGCCCGcGCCAaucaauAGGCCGcCuGCCGCu -3'
miRNA:   3'- -CCUu---CGGGC-CGGU------UCCGGCuG-CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 136328 0.75 0.253861
Target:  5'- uGAAGCCC-GCCGcGGCguagaagcugguuCGGCGCCGCa -3'
miRNA:   3'- cCUUCGGGcCGGUuCCG-------------GCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.