miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 162659 0.67 0.619661
Target:  5'- cGGAAGCgcgCCGGCgGGucguagguguacGGUCGgcGCGCUGCg -3'
miRNA:   3'- -CCUUCG---GGCCGgUU------------CCGGC--UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 162488 0.66 0.696272
Target:  5'- gGGAAGUCgGGCaacGGuuGGCgguugucgccauuGCCGCg -3'
miRNA:   3'- -CCUUCGGgCCGguuCCggCUG-------------CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 161280 0.73 0.322804
Target:  5'- --uAGUCCGGCCGGGGCCcgccuauugccggcGcggucaACGCCGCg -3'
miRNA:   3'- ccuUCGGGCCGGUUCCGG--------------C------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 160654 0.69 0.533131
Target:  5'- -uGGGCgCCGGCaauggaGGGGCa-ACGCCGCg -3'
miRNA:   3'- ccUUCG-GGCCGg-----UUCCGgcUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 160415 0.68 0.577961
Target:  5'- cGGAcguguccgcGGCCUccgcuuucuuccuaGGC--AGGCCGGCGCCGg -3'
miRNA:   3'- -CCU---------UCGGG--------------CCGguUCCGGCUGCGGCg -5'
24612 3' -61.6 NC_005264.1 + 160353 0.68 0.552077
Target:  5'- cGAGGCCCGccgaCCAucGUCGAagcaGCCGCg -3'
miRNA:   3'- cCUUCGGGCc---GGUucCGGCUg---CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 159843 0.66 0.677984
Target:  5'- -cGAGCcgCCGGCCca-GUCGGCGCuCGCa -3'
miRNA:   3'- ccUUCG--GGCCGGuucCGGCUGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 159546 0.69 0.541629
Target:  5'- cGGAAGCCCcucacuccccgucGcCCAGGGacgUGGCGCUGCg -3'
miRNA:   3'- -CCUUCGGG-------------CcGGUUCCg--GCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 159082 0.67 0.639141
Target:  5'- aGGAAGCCUugcguccGCCGugaaGCCGGCGaUCGCg -3'
miRNA:   3'- -CCUUCGGGc------CGGUuc--CGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 158564 0.66 0.715332
Target:  5'- --uGGCCa-GCCAugcAGGCCGAacagacuCGCUGCg -3'
miRNA:   3'- ccuUCGGgcCGGU---UCCGGCU-------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 158520 0.66 0.706783
Target:  5'- gGGcAGGCCUGcGCUguGGUgGACGCCa- -3'
miRNA:   3'- -CC-UUCGGGC-CGGuuCCGgCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 158214 0.67 0.648877
Target:  5'- --cGGCCCGGCgauuuuCGAGaacgcGCCuACGCCGCc -3'
miRNA:   3'- ccuUCGGGCCG------GUUC-----CGGcUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 156441 0.66 0.677984
Target:  5'- aGGAGUUCGGCau-GGCCGugGagcaGCa -3'
miRNA:   3'- cCUUCGGGCCGguuCCGGCugCgg--CG- -5'
24612 3' -61.6 NC_005264.1 + 155781 0.76 0.197019
Target:  5'- --cGGCgCCGGCCGGcGCCGuCGCCGCu -3'
miRNA:   3'- ccuUCG-GGCCGGUUcCGGCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 155167 0.68 0.609931
Target:  5'- cGGAcgAGCCCauggaGGCCGAGcccuccgaGCCGGCagGCgGCg -3'
miRNA:   3'- -CCU--UCGGG-----CCGGUUC--------CGGCUG--CGgCG- -5'
24612 3' -61.6 NC_005264.1 + 154954 0.67 0.628426
Target:  5'- aGGAGaccUCCGacGCCGcaucuggGGcGCCGACGCCGCc -3'
miRNA:   3'- -CCUUc--GGGC--CGGU-------UC-CGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 154868 0.66 0.677984
Target:  5'- cGGaAAGCaaCGGaCCucuAGGCagcgacaaaGACGCCGCg -3'
miRNA:   3'- -CC-UUCGg-GCC-GGu--UCCGg--------CUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 154610 0.8 0.124249
Target:  5'- gGGGAGCUgcugCGGCUucGGCCGAUGgCCGCg -3'
miRNA:   3'- -CCUUCGG----GCCGGuuCCGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 154559 0.7 0.442617
Target:  5'- cGGAucucCCCGGCCugcaacGAGGCgGacaccaggGCGCCGCu -3'
miRNA:   3'- -CCUuc--GGGCCGG------UUCCGgC--------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 154491 0.75 0.25444
Target:  5'- aGGAAGCCaCGGUUAAGGuCUGcggggcgcacAUGCCGCg -3'
miRNA:   3'- -CCUUCGG-GCCGGUUCC-GGC----------UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.