miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 5' -54.5 NC_005264.1 + 93837 0.66 0.961224
Target:  5'- aCGAUGGCGaCaggGCCGCgGGCcaCUGGCc -3'
miRNA:   3'- -GCUACUGCaGa--CGGCG-CCGa-GAUUGa -5'
24612 5' -54.5 NC_005264.1 + 63812 0.66 0.961224
Target:  5'- ---cGAUuUCUGCCGCGcGCUCgaccAGCUc -3'
miRNA:   3'- gcuaCUGcAGACGGCGC-CGAGa---UUGA- -5'
24612 5' -54.5 NC_005264.1 + 88157 0.66 0.961224
Target:  5'- ---aGACGUC-GCCgGUGGCgCUAACg -3'
miRNA:   3'- gcuaCUGCAGaCGG-CGCCGaGAUUGa -5'
24612 5' -54.5 NC_005264.1 + 91888 0.66 0.957591
Target:  5'- gCGggGugGUUgGCCGCGGCagCgaugGGCg -3'
miRNA:   3'- -GCuaCugCAGaCGGCGCCGa-Ga---UUGa -5'
24612 5' -54.5 NC_005264.1 + 2646 0.66 0.953733
Target:  5'- aGGUuGCGcUCUGCaGCGGCagcUCUGACg -3'
miRNA:   3'- gCUAcUGC-AGACGgCGCCG---AGAUUGa -5'
24612 5' -54.5 NC_005264.1 + 68225 0.66 0.940764
Target:  5'- gCGAUGACGUauccgcGCCGgCGGCg--GGCUu -3'
miRNA:   3'- -GCUACUGCAga----CGGC-GCCGagaUUGA- -5'
24612 5' -54.5 NC_005264.1 + 74109 0.67 0.930931
Target:  5'- gCGGUcGACG-CUGUCGCGGCUg----- -3'
miRNA:   3'- -GCUA-CUGCaGACGGCGCCGAgauuga -5'
24612 5' -54.5 NC_005264.1 + 127001 0.67 0.930931
Target:  5'- aGAUGACG-CUGCCcacGCGGCaaCUcGCa -3'
miRNA:   3'- gCUACUGCaGACGG---CGCCGa-GAuUGa -5'
24612 5' -54.5 NC_005264.1 + 38796 0.67 0.930931
Target:  5'- cCGGUGACGUaCU-CCGCGGCgaccccggCgcgGACg -3'
miRNA:   3'- -GCUACUGCA-GAcGGCGCCGa-------Ga--UUGa -5'
24612 5' -54.5 NC_005264.1 + 157822 0.67 0.930931
Target:  5'- cCGGUGACGUaCU-CCGCGGCgaccccggCgcgGACg -3'
miRNA:   3'- -GCUACUGCA-GAcGGCGCCGa-------Ga--UUGa -5'
24612 5' -54.5 NC_005264.1 + 15593 0.67 0.920134
Target:  5'- uGcgGGCG-CaGCUGCGGCUCcGGCa -3'
miRNA:   3'- gCuaCUGCaGaCGGCGCCGAGaUUGa -5'
24612 5' -54.5 NC_005264.1 + 107721 0.67 0.914374
Target:  5'- --cUGaACGUCcgagUGCCcCGGCUCUGGCa -3'
miRNA:   3'- gcuAC-UGCAG----ACGGcGCCGAGAUUGa -5'
24612 5' -54.5 NC_005264.1 + 98766 0.68 0.895667
Target:  5'- gGAaGGCGgcUCUGCUGCGGCU--GACa -3'
miRNA:   3'- gCUaCUGC--AGACGGCGCCGAgaUUGa -5'
24612 5' -54.5 NC_005264.1 + 79923 0.68 0.882031
Target:  5'- ---cGACGUCUGCgGCGGaCUCc-ACUc -3'
miRNA:   3'- gcuaCUGCAGACGgCGCC-GAGauUGA- -5'
24612 5' -54.5 NC_005264.1 + 29469 0.69 0.867501
Target:  5'- gCGAUGAcucucgccgaguCGUCgaggaggGCCGCGGuCUCUAGu- -3'
miRNA:   3'- -GCUACU------------GCAGa------CGGCGCC-GAGAUUga -5'
24612 5' -54.5 NC_005264.1 + 32554 0.69 0.867501
Target:  5'- gGAUGugG-CUGCCGCGGUa------ -3'
miRNA:   3'- gCUACugCaGACGGCGCCGagauuga -5'
24612 5' -54.5 NC_005264.1 + 35277 0.69 0.867501
Target:  5'- gCGcgGGCG-CgGCCGUGGUcCUGACUg -3'
miRNA:   3'- -GCuaCUGCaGaCGGCGCCGaGAUUGA- -5'
24612 5' -54.5 NC_005264.1 + 17976 0.69 0.859143
Target:  5'- cCGAUGGCGagcgcguUCaaaGCCGgcacCGGCUCUGACg -3'
miRNA:   3'- -GCUACUGC-------AGa--CGGC----GCCGAGAUUGa -5'
24612 5' -54.5 NC_005264.1 + 97511 0.69 0.844122
Target:  5'- aGAUuGCcaggagCUGCCGCGGCUgUGGCg -3'
miRNA:   3'- gCUAcUGca----GACGGCGCCGAgAUUGa -5'
24612 5' -54.5 NC_005264.1 + 17340 0.69 0.844122
Target:  5'- ---gGACGUCUGCagugccuucCGCGGCagCUGGCg -3'
miRNA:   3'- gcuaCUGCAGACG---------GCGCCGa-GAUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.