miRNA: 3'- gcuaCUGCAGaCGG-CGCCGAGAuUGa -5'
miRNA: 3'- gcUACUGCAGa---CGGCGCCGagaUUGA- -5'
miRNA: 3'- -GCUACUGCAGA---------------CGGCGCCG-AGAuUGa -5'
miRNA: 3'- gCUACUGcAG--ACGGCGCCGAGAUUGA- -5'
miRNA: 3'- -GCUACUGCAGACGGCGCCGAGAUUGA- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24612 | 5' | -54.5 | NC_005264.1 | + | 46444 | 0.7 | 0.827555 |
|
Target: 5'- ---cGACGUCgGCCuGCGGCUUUuGCg -3' miRNA: 3'- gcuaCUGCAGaCGG-CGCCGAGAuUGa -5' |
|||||||
| 24612 | 5' | -54.5 | NC_005264.1 | + | 26145 | 0.7 | 0.792334 |
|
Target: 5'- -cAUGAUGUCccagGCCGCGGCgagGACUu -3' miRNA: 3'- gcUACUGCAGa---CGGCGCCGagaUUGA- -5' |
|||||||
| 24612 | 5' | -54.5 | NC_005264.1 | + | 5504 | 0.72 | 0.729408 |
|
Target: 5'- gCGAUGAUGUUUguuggccugaugacaGCCGCGGCgUCUcGCg -3' miRNA: 3'- -GCUACUGCAGA---------------CGGCGCCG-AGAuUGa -5' |
|||||||
| 24612 | 5' | -54.5 | NC_005264.1 | + | 146427 | 0.84 | 0.171421 |
|
Target: 5'- uGAUGGC-UCgaUGCCGCGGCUCUGACUu -3' miRNA: 3'- gCUACUGcAG--ACGGCGCCGAGAUUGA- -5' |
|||||||
| 24612 | 5' | -54.5 | NC_005264.1 | + | 64434 | 1.07 | 0.005549 |
|
Target: 5'- gCGAUGACGUCUGCCGCGGCUCUAACUc -3' miRNA: 3'- -GCUACUGCAGACGGCGCCGAGAUUGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home