Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24620 | 5' | -56.7 | NC_005264.1 | + | 40057 | 0.66 | 0.892679 |
Target: 5'- -gCCCGCAGCgcCccggcggcaagaggCCCCGCUCCucGUCg -3' miRNA: 3'- caGGGCGUUGaaG--------------GGGGUGAGG--UAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 159084 | 0.66 | 0.892679 |
Target: 5'- -gCCCGCAGCgcCccggcggcaagaggCCCCGCUCCucGUCg -3' miRNA: 3'- caGGGCGUUGaaG--------------GGGGUGAGG--UAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 59152 | 0.66 | 0.887976 |
Target: 5'- -gCCCuCAACUUCCCCCucGC-CCAgCUg -3' miRNA: 3'- caGGGcGUUGAAGGGGG--UGaGGUaGA- -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 119077 | 0.66 | 0.887976 |
Target: 5'- aGUCuCCGUaAACUguucUCCCCCacGCUCCAg-- -3' miRNA: 3'- -CAG-GGCG-UUGA----AGGGGG--UGAGGUaga -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 50 | 0.66 | 0.887976 |
Target: 5'- aGUCuCCGUaAACUguucUCCCCCacGCUCCAg-- -3' miRNA: 3'- -CAG-GGCG-UUGA----AGGGGG--UGAGGUaga -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 105904 | 0.66 | 0.873938 |
Target: 5'- aUCCUGCGucuccGCUUgCCCCCucuACgCCAUCUu -3' miRNA: 3'- cAGGGCGU-----UGAA-GGGGG---UGaGGUAGA- -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 76909 | 0.67 | 0.835187 |
Target: 5'- cUCCCaggagggaGCGACgaCCCCCuucuauuCUCCGUCg -3' miRNA: 3'- cAGGG--------CGUUGaaGGGGGu------GAGGUAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 48160 | 0.67 | 0.834363 |
Target: 5'- aUCCUGCucggcguGGCUgcaCCCCCGCUUCAUg- -3' miRNA: 3'- cAGGGCG-------UUGAa--GGGGGUGAGGUAga -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 102789 | 0.67 | 0.82686 |
Target: 5'- uGUCUacguggCGCAAUucuuUUCCCCCACcaugcggcgccUCCGUCUa -3' miRNA: 3'- -CAGG------GCGUUG----AAGGGGGUG-----------AGGUAGA- -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 2176 | 0.67 | 0.818357 |
Target: 5'- -cCCCGCGGCcgUUgCCC-CUCCAUUg -3' miRNA: 3'- caGGGCGUUGa-AGgGGGuGAGGUAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 18342 | 0.67 | 0.818357 |
Target: 5'- cGUCCCcCAACUggcgaagaugcUCCCCCAUagCUGUCUc -3' miRNA: 3'- -CAGGGcGUUGA-----------AGGGGGUGa-GGUAGA- -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 9587 | 0.67 | 0.815773 |
Target: 5'- -gCCCGCAGuagUCCCCCcccaugcgccgaagGCUCCGUa- -3' miRNA: 3'- caGGGCGUUga-AGGGGG--------------UGAGGUAga -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 82801 | 0.68 | 0.809685 |
Target: 5'- cUCgaCGCGACaguggucUCCCCCGCUCCAa-- -3' miRNA: 3'- cAGg-GCGUUGa------AGGGGGUGAGGUaga -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 26303 | 0.68 | 0.809685 |
Target: 5'- cUCCCGCGuCUUCgUCCGCgUCGUCUc -3' miRNA: 3'- cAGGGCGUuGAAGgGGGUGaGGUAGA- -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 35889 | 0.68 | 0.800854 |
Target: 5'- cGUCUCGCGGCagcguuacgUCCCCCcaguACUCCggCg -3' miRNA: 3'- -CAGGGCGUUGa--------AGGGGG----UGAGGuaGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 154915 | 0.68 | 0.800854 |
Target: 5'- cGUCUCGCGGCagcguuacgUCCCCCcaguACUCCggCg -3' miRNA: 3'- -CAGGGCGUUGa--------AGGGGG----UGAGGuaGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 77923 | 0.68 | 0.791871 |
Target: 5'- uGUCCCGCGccuggcuCUUCCCgCC-CUcCCGUCc -3' miRNA: 3'- -CAGGGCGUu------GAAGGG-GGuGA-GGUAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 7335 | 0.68 | 0.791871 |
Target: 5'- aUCCCGCGuCUucgUCCUCCGCcUCGUCa -3' miRNA: 3'- cAGGGCGUuGA---AGGGGGUGaGGUAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 126362 | 0.68 | 0.791871 |
Target: 5'- aUCCCGCGuCUucgUCCUCCGCcUCGUCa -3' miRNA: 3'- cAGGGCGUuGA---AGGGGGUGaGGUAGa -5' |
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24620 | 5' | -56.7 | NC_005264.1 | + | 40618 | 0.68 | 0.764101 |
Target: 5'- gGUCCUGCGAaauaagcccUUCCCCGCgCCGUCg -3' miRNA: 3'- -CAGGGCGUUga-------AGGGGGUGaGGUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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