miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 59710 0.71 0.363074
Target:  5'- --gCGCGCCGCGCCgGCgGCUaccgcgccgGACGu -3'
miRNA:   3'- caaGCGCGGCGCGGaCGgCGA---------CUGUu -5'
24629 3' -61.1 NC_005264.1 + 61844 0.68 0.560299
Target:  5'- --cUGCGCCGCGUacggGuuGUUGGCGAa -3'
miRNA:   3'- caaGCGCGGCGCGga--CggCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 64299 0.68 0.550477
Target:  5'- -aUCGCgGCCcacaGCGCgUUGCCGCUGcCAAg -3'
miRNA:   3'- caAGCG-CGG----CGCG-GACGGCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 64372 0.68 0.550477
Target:  5'- -cUCGCG-CGUGCCgGCCggGUUGACAAa -3'
miRNA:   3'- caAGCGCgGCGCGGaCGG--CGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 68255 0.74 0.24133
Target:  5'- --cCGCGCCGCgggcgGCCUGCUGCUGcCGc -3'
miRNA:   3'- caaGCGCGGCG-----CGGACGGCGACuGUu -5'
24629 3' -61.1 NC_005264.1 + 68443 0.68 0.530998
Target:  5'- --cCGCGCCGCgGUCUGCgCGCggagGGCc- -3'
miRNA:   3'- caaGCGCGGCG-CGGACG-GCGa---CUGuu -5'
24629 3' -61.1 NC_005264.1 + 78509 0.7 0.438146
Target:  5'- uGUUgGCaCCGCGCUggguacgcGCCGCUGGCGu -3'
miRNA:   3'- -CAAgCGcGGCGCGGa-------CGGCGACUGUu -5'
24629 3' -61.1 NC_005264.1 + 78528 0.66 0.6601
Target:  5'- -aUCGCGCCGUGCCcGgUGCacGACu- -3'
miRNA:   3'- caAGCGCGGCGCGGaCgGCGa-CUGuu -5'
24629 3' -61.1 NC_005264.1 + 79653 1.06 0.001473
Target:  5'- aGUUCGCGCCGCGCCUGCCGCUGACAAa -3'
miRNA:   3'- -CAAGCGCGGCGCGGACGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 82965 0.67 0.570169
Target:  5'- -gUCGcCGCCGCGCCc-CCG-UGACGAa -3'
miRNA:   3'- caAGC-GCGGCGCGGacGGCgACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 85537 0.71 0.38709
Target:  5'- -cUCGC-CCGCGaCCUGaaGCUGACGu -3'
miRNA:   3'- caAGCGcGGCGC-GGACggCGACUGUu -5'
24629 3' -61.1 NC_005264.1 + 86142 0.68 0.550477
Target:  5'- -gUUGCGCCGCGCUccgcGCCaaGCUGgGCAGa -3'
miRNA:   3'- caAGCGCGGCGCGGa---CGG--CGAC-UGUU- -5'
24629 3' -61.1 NC_005264.1 + 87745 0.72 0.332694
Target:  5'- -cUCgGCGCCgGCGCCUGCCGCaGcgccGCGAa -3'
miRNA:   3'- caAG-CGCGG-CGCGGACGGCGaC----UGUU- -5'
24629 3' -61.1 NC_005264.1 + 88134 0.73 0.290703
Target:  5'- --gCGCGCCGCGCCcuacaaGUCGUUGACu- -3'
miRNA:   3'- caaGCGCGGCGCGGa-----CGGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 96118 0.66 0.680041
Target:  5'- ---gGCGCCgGCGCUUGuuGCUccccGGCGAc -3'
miRNA:   3'- caagCGCGG-CGCGGACggCGA----CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 102000 0.67 0.590029
Target:  5'- --aCGCGCCGaCGCCgacGCCaaGCUGAa-- -3'
miRNA:   3'- caaGCGCGGC-GCGGa--CGG--CGACUguu -5'
24629 3' -61.1 NC_005264.1 + 103377 0.67 0.599007
Target:  5'- -gUCGUcaugccuGCCGCGCgggGCCGCUuuGACAAa -3'
miRNA:   3'- caAGCG-------CGGCGCGga-CGGCGA--CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 104820 0.67 0.577103
Target:  5'- ---gGCGCCGCacgacggccuguccGCCgggGCCGCUGAg-- -3'
miRNA:   3'- caagCGCGGCG--------------CGGa--CGGCGACUguu -5'
24629 3' -61.1 NC_005264.1 + 105764 0.67 0.580081
Target:  5'- --aCGaagaUGCGCCcGCCGCUGACGAg -3'
miRNA:   3'- caaGCgcg-GCGCGGaCGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 106254 0.67 0.590029
Target:  5'- ---gGCGCuCGCGCCUGCUGaC-GGCGGa -3'
miRNA:   3'- caagCGCG-GCGCGGACGGC-GaCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.