miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 2853 0.71 0.363074
Target:  5'- -cUCGCGCCGuCGCCcgcUGCgGCUG-CGAu -3'
miRNA:   3'- caAGCGCGGC-GCGG---ACGgCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 7116 0.68 0.540708
Target:  5'- --aCGCGCCguuaGCGCCgGCCGaCUGAg-- -3'
miRNA:   3'- caaGCGCGG----CGCGGaCGGC-GACUguu -5'
24629 3' -61.1 NC_005264.1 + 9711 0.73 0.27766
Target:  5'- uUUCGCGCCGCugagccauuguGCCcGCCGC-GGCAAa -3'
miRNA:   3'- cAAGCGCGGCG-----------CGGaCGGCGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 11427 0.67 0.600006
Target:  5'- -gUCGCGgCGgaCGCCgGCCGCcGGCAu -3'
miRNA:   3'- caAGCGCgGC--GCGGaCGGCGaCUGUu -5'
24629 3' -61.1 NC_005264.1 + 11969 0.66 0.650094
Target:  5'- -gUCGCGCCaUGuCUUGCCGCgcgcGGCAc -3'
miRNA:   3'- caAGCGCGGcGC-GGACGGCGa---CUGUu -5'
24629 3' -61.1 NC_005264.1 + 13889 0.67 0.620022
Target:  5'- --aCGCGUCGuCGCCUGCagGC-GACGGg -3'
miRNA:   3'- caaGCGCGGC-GCGGACGg-CGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 16078 0.71 0.38709
Target:  5'- --cCGCGCgGCGCUUGCUGUUGcCGGg -3'
miRNA:   3'- caaGCGCGgCGCGGACGGCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 17680 0.66 0.650094
Target:  5'- -gUCaCGCCGgcuCGUCaGCCGCUGGCGGa -3'
miRNA:   3'- caAGcGCGGC---GCGGaCGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 26650 0.68 0.560299
Target:  5'- ---aGCGCgGCGCCggcGCCGCgcuagaacGACAAa -3'
miRNA:   3'- caagCGCGgCGCGGa--CGGCGa-------CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 29454 0.68 0.550477
Target:  5'- --aCGgGCUGCGCC-GCCGCgaUGACu- -3'
miRNA:   3'- caaGCgCGGCGCGGaCGGCG--ACUGuu -5'
24629 3' -61.1 NC_005264.1 + 29938 0.66 0.680041
Target:  5'- --aCGCGCUGCGCCUaGCCGgU--CAAc -3'
miRNA:   3'- caaGCGCGGCGCGGA-CGGCgAcuGUU- -5'
24629 3' -61.1 NC_005264.1 + 29954 0.68 0.515597
Target:  5'- cUUCGCucacagcaugccaauGuCCGCGUCccugGCCGCUGGCAAc -3'
miRNA:   3'- cAAGCG---------------C-GGCGCGGa---CGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 33251 0.66 0.640073
Target:  5'- --cCGCGCCgcaGCGCCUGCagaGCgcGCAAg -3'
miRNA:   3'- caaGCGCGG---CGCGGACGg--CGacUGUU- -5'
24629 3' -61.1 NC_005264.1 + 34313 0.79 0.114785
Target:  5'- ---gGCGCCGCGCCUGaCGCUGGCu- -3'
miRNA:   3'- caagCGCGGCGCGGACgGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 40937 0.71 0.392017
Target:  5'- --cCGCGCCGCGCCccggucgaucgcaGCCGCagcgGGCGAc -3'
miRNA:   3'- caaGCGCGGCGCGGa------------CGGCGa---CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 42559 0.75 0.204048
Target:  5'- cUUCGCGCCGgcaGCCuUGCCGgaGGCGAg -3'
miRNA:   3'- cAAGCGCGGCg--CGG-ACGGCgaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 44640 0.67 0.570169
Target:  5'- -cUUGCGCCGCGCCUuagacuggugcGCCaaGUUcGACGAg -3'
miRNA:   3'- caAGCGCGGCGCGGA-----------CGG--CGA-CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 49506 0.67 0.580081
Target:  5'- --gCGCGUcuucaCGUGCCUGCUGCagagGGCGAg -3'
miRNA:   3'- caaGCGCG-----GCGCGGACGGCGa---CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 52636 0.69 0.465078
Target:  5'- --cCGUGCCGCcCCUGCCGUuagGAUGAg -3'
miRNA:   3'- caaGCGCGGCGcGGACGGCGa--CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 58897 0.66 0.6601
Target:  5'- cGUUCGCGCauaGCGgaUGCCGCcuccucgaUGGCGu -3'
miRNA:   3'- -CAAGCGCGg--CGCggACGGCG--------ACUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.