miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 79653 1.06 0.001473
Target:  5'- aGUUCGCGCCGCGCCUGCCGCUGACAAa -3'
miRNA:   3'- -CAAGCGCGGCGCGGACGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 82965 0.67 0.570169
Target:  5'- -gUCGcCGCCGCGCCc-CCG-UGACGAa -3'
miRNA:   3'- caAGC-GCGGCGCGGacGGCgACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 106254 0.67 0.590029
Target:  5'- ---gGCGCuCGCGCCUGCUGaC-GGCGGa -3'
miRNA:   3'- caagCGCG-GCGCGGACGGC-GaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 29938 0.66 0.680041
Target:  5'- --aCGCGCUGCGCCUaGCCGgU--CAAc -3'
miRNA:   3'- caaGCGCGGCGCGGA-CGGCgAcuGUU- -5'
24629 3' -61.1 NC_005264.1 + 136477 0.73 0.284122
Target:  5'- ---gGCGCCGCgcaGCCUGCCGC-GGCGc -3'
miRNA:   3'- caagCGCGGCG---CGGACGGCGaCUGUu -5'
24629 3' -61.1 NC_005264.1 + 59710 0.71 0.363074
Target:  5'- --gCGCGCCGCGCCgGCgGCUaccgcgccgGACGu -3'
miRNA:   3'- caaGCGCGGCGCGGaCGgCGA---------CUGUu -5'
24629 3' -61.1 NC_005264.1 + 85537 0.71 0.38709
Target:  5'- -cUCGC-CCGCGaCCUGaaGCUGACGu -3'
miRNA:   3'- caAGCGcGGCGC-GGACggCGACUGUu -5'
24629 3' -61.1 NC_005264.1 + 159964 0.71 0.392017
Target:  5'- --cCGCGCCGCGCCccggucgaucgcaGCCGCagcgGGCGAc -3'
miRNA:   3'- caaGCGCGGCGCGGa------------CGGCGa---CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 52636 0.69 0.465078
Target:  5'- --cCGUGCCGCcCCUGCCGUuagGAUGAg -3'
miRNA:   3'- caaGCGCGGCGcGGACGGCGa--CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 61844 0.68 0.560299
Target:  5'- --cUGCGCCGCGUacggGuuGUUGGCGAa -3'
miRNA:   3'- caaGCGCGGCGCGga--CggCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 29454 0.68 0.550477
Target:  5'- --aCGgGCUGCGCC-GCCGCgaUGACu- -3'
miRNA:   3'- caaGCgCGGCGCGGaCGGCG--ACUGuu -5'
24629 3' -61.1 NC_005264.1 + 131992 0.69 0.456003
Target:  5'- ---gGCGgCGCGCC-GCCGCcGACGAc -3'
miRNA:   3'- caagCGCgGCGCGGaCGGCGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 153340 0.79 0.114785
Target:  5'- ---gGCGCCGCGCCUGaCGCUGGCu- -3'
miRNA:   3'- caagCGCGGCGCGGACgGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 64299 0.68 0.550477
Target:  5'- -aUCGCgGCCcacaGCGCgUUGCCGCUGcCAAg -3'
miRNA:   3'- caAGCG-CGG----CGCG-GACGGCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 42559 0.75 0.204048
Target:  5'- cUUCGCGCCGgcaGCCuUGCCGgaGGCGAg -3'
miRNA:   3'- cAAGCGCGGCg--CGG-ACGGCgaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 78509 0.7 0.438146
Target:  5'- uGUUgGCaCCGCGCUggguacgcGCCGCUGGCGu -3'
miRNA:   3'- -CAAgCGcGGCGCGGa-------CGGCGACUGUu -5'
24629 3' -61.1 NC_005264.1 + 26650 0.68 0.560299
Target:  5'- ---aGCGCgGCGCCggcGCCGCgcuagaacGACAAa -3'
miRNA:   3'- caagCGCGgCGCGGa--CGGCGa-------CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 49506 0.67 0.580081
Target:  5'- --gCGCGUcuucaCGUGCCUGCUGCagagGGCGAg -3'
miRNA:   3'- caaGCGCG-----GCGCGGACGGCGa---CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 68255 0.74 0.24133
Target:  5'- --cCGCGCCGCgggcgGCCUGCUGCUGcCGc -3'
miRNA:   3'- caaGCGCGGCG-----CGGACGGCGACuGUu -5'
24629 3' -61.1 NC_005264.1 + 121879 0.71 0.363074
Target:  5'- -cUCGCGCCGuCGCCcgcUGCgGCUG-CGAu -3'
miRNA:   3'- caAGCGCGGC-GCGG---ACGgCGACuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.