miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 79653 1.06 0.001473
Target:  5'- aGUUCGCGCCGCGCCUGCCGCUGACAAa -3'
miRNA:   3'- -CAAGCGCGGCGCGGACGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 153340 0.79 0.114785
Target:  5'- ---gGCGCCGCGCCUGaCGCUGGCu- -3'
miRNA:   3'- caagCGCGGCGCGGACgGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 34313 0.79 0.114785
Target:  5'- ---gGCGCCGCGCCUGaCGCUGGCu- -3'
miRNA:   3'- caagCGCGGCGCGGACgGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 42559 0.75 0.204048
Target:  5'- cUUCGCGCCGgcaGCCuUGCCGgaGGCGAg -3'
miRNA:   3'- cAAGCGCGGCg--CGG-ACGGCgaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 68255 0.74 0.24133
Target:  5'- --cCGCGCCGCgggcgGCCUGCUGCUGcCGc -3'
miRNA:   3'- caaGCGCGGCG-----CGGACGGCGACuGUu -5'
24629 3' -61.1 NC_005264.1 + 9711 0.73 0.27766
Target:  5'- uUUCGCGCCGCugagccauuguGCCcGCCGC-GGCAAa -3'
miRNA:   3'- cAAGCGCGGCG-----------CGGaCGGCGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 136477 0.73 0.284122
Target:  5'- ---gGCGCCGCgcaGCCUGCCGC-GGCGc -3'
miRNA:   3'- caagCGCGGCG---CGGACGGCGaCUGUu -5'
24629 3' -61.1 NC_005264.1 + 88134 0.73 0.290703
Target:  5'- --gCGCGCCGCGCCcuacaaGUCGUUGACu- -3'
miRNA:   3'- caaGCGCGGCGCGGa-----CGGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 140845 0.72 0.302164
Target:  5'- --aCGCGCCGCGCCUuucgcuugcgccagGCCGaCUGcCAGg -3'
miRNA:   3'- caaGCGCGGCGCGGA--------------CGGC-GACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 87745 0.72 0.332694
Target:  5'- -cUCgGCGCCgGCGCCUGCCGCaGcgccGCGAa -3'
miRNA:   3'- caAG-CGCGG-CGCGGACGGCGaC----UGUU- -5'
24629 3' -61.1 NC_005264.1 + 145483 0.72 0.347647
Target:  5'- --cCGCGCCGcCGCCagcUGCCGCggaaGGCAc -3'
miRNA:   3'- caaGCGCGGC-GCGG---ACGGCGa---CUGUu -5'
24629 3' -61.1 NC_005264.1 + 59710 0.71 0.363074
Target:  5'- --gCGCGCCGCGCCgGCgGCUaccgcgccgGACGu -3'
miRNA:   3'- caaGCGCGGCGCGGaCGgCGA---------CUGUu -5'
24629 3' -61.1 NC_005264.1 + 2853 0.71 0.363074
Target:  5'- -cUCGCGCCGuCGCCcgcUGCgGCUG-CGAu -3'
miRNA:   3'- caAGCGCGGC-GCGG---ACGgCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 121879 0.71 0.363074
Target:  5'- -cUCGCGCCGuCGCCcgcUGCgGCUG-CGAu -3'
miRNA:   3'- caAGCGCGGC-GCGG---ACGgCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 148941 0.71 0.370964
Target:  5'- cGUUCGCGCCccguCGCCUGCagGC-GACGAc -3'
miRNA:   3'- -CAAGCGCGGc---GCGGACGg-CGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 16078 0.71 0.38709
Target:  5'- --cCGCGCgGCGCUUGCUGUUGcCGGg -3'
miRNA:   3'- caaGCGCGgCGCGGACGGCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 85537 0.71 0.38709
Target:  5'- -cUCGC-CCGCGaCCUGaaGCUGACGu -3'
miRNA:   3'- caAGCGcGGCGC-GGACggCGACUGUu -5'
24629 3' -61.1 NC_005264.1 + 159964 0.71 0.392017
Target:  5'- --cCGCGCCGCGCCccggucgaucgcaGCCGCagcgGGCGAc -3'
miRNA:   3'- caaGCGCGGCGCGGa------------CGGCGa---CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 40937 0.71 0.392017
Target:  5'- --cCGCGCCGCGCCccggucgaucgcaGCCGCagcgGGCGAc -3'
miRNA:   3'- caaGCGCGGCGCGGa------------CGGCGa---CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 141995 0.71 0.395325
Target:  5'- -gUCGCGCaGCGCCgucguaUGCCGC-GGCAGa -3'
miRNA:   3'- caAGCGCGgCGCGG------ACGGCGaCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.