miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 5' -59.3 NC_005264.1 + 39367 0.7 0.525854
Target:  5'- gGCCA-CCGCAUGCCCGUacauaGAGgUCAu -3'
miRNA:   3'- -CGGUcGGCGUACGGGCGc----UUCgAGUu -5'
24644 5' -59.3 NC_005264.1 + 46550 0.68 0.615835
Target:  5'- gGCCacAGCCGUAgccGCCCGCGccacGGCUUc- -3'
miRNA:   3'- -CGG--UCGGCGUa--CGGGCGCu---UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 46905 0.72 0.423526
Target:  5'- aGCUGcGCCGCGUGUUCGCGGcuCUCAAg -3'
miRNA:   3'- -CGGU-CGGCGUACGGGCGCUucGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 47900 0.69 0.575429
Target:  5'- cGUCAagaauuuacGCaCGUGUGCCCGCGGAGCcuuaUCGAc -3'
miRNA:   3'- -CGGU---------CG-GCGUACGGGCGCUUCG----AGUU- -5'
24644 5' -59.3 NC_005264.1 + 49812 0.67 0.66655
Target:  5'- cCCAGUCGCGg--CCGCGGaaaAGCUCAu -3'
miRNA:   3'- cGGUCGGCGUacgGGCGCU---UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 55455 0.67 0.663517
Target:  5'- -gCAGCCGCAaccgucccuucuguUacGCCCGCGAgaaauaauAGCUCGc -3'
miRNA:   3'- cgGUCGGCGU--------------A--CGGGCGCU--------UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 59944 0.66 0.715585
Target:  5'- aGCuCGGCgGUuaucaugGUGUCCGCGccGCUCAGc -3'
miRNA:   3'- -CG-GUCGgCG-------UACGGGCGCuuCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 60004 0.67 0.696715
Target:  5'- -aCGGCCGCGUGgCCGCG--GCcCAAg -3'
miRNA:   3'- cgGUCGGCGUACgGGCGCuuCGaGUU- -5'
24644 5' -59.3 NC_005264.1 + 63640 0.68 0.636139
Target:  5'- -gCGGCCGCGgagGCCUGCGAGGa---- -3'
miRNA:   3'- cgGUCGGCGUa--CGGGCGCUUCgaguu -5'
24644 5' -59.3 NC_005264.1 + 64380 0.67 0.696715
Target:  5'- uGCCGGCCGgGUugacaaauCCCGCcGAGCUCc- -3'
miRNA:   3'- -CGGUCGGCgUAc-------GGGCGcUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 65459 0.72 0.423526
Target:  5'- uGCaCGGCCuGCggGCCUGCGA-GCUCGc -3'
miRNA:   3'- -CG-GUCGG-CGuaCGGGCGCUuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 68230 0.67 0.706675
Target:  5'- uCCAcGCCGCAccgccaagccaUGCCCGCGccGCgggCGg -3'
miRNA:   3'- cGGU-CGGCGU-----------ACGGGCGCuuCGa--GUu -5'
24644 5' -59.3 NC_005264.1 + 70242 0.66 0.744842
Target:  5'- gGCCAG-CGCAucaaaccUGCCCGCGucGGCg--- -3'
miRNA:   3'- -CGGUCgGCGU-------ACGGGCGCu-UCGaguu -5'
24644 5' -59.3 NC_005264.1 + 71539 0.67 0.65643
Target:  5'- aGCUguaCCGCcUGCUgGCGGAGCUCGu -3'
miRNA:   3'- -CGGuc-GGCGuACGGgCGCUUCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 71817 0.66 0.726399
Target:  5'- -gCGGCCGaagccGCCCGCGggGUcgCGAa -3'
miRNA:   3'- cgGUCGGCgua--CGGGCGCuuCGa-GUU- -5'
24644 5' -59.3 NC_005264.1 + 74741 0.66 0.726399
Target:  5'- cGCCGGCCGacgcuGUGCCCGaCGcgcacuGCUUg- -3'
miRNA:   3'- -CGGUCGGCg----UACGGGC-GCuu----CGAGuu -5'
24644 5' -59.3 NC_005264.1 + 75742 0.69 0.575429
Target:  5'- gGCCAGuCUGgGUGCguuacCCGCGAGGCUg-- -3'
miRNA:   3'- -CGGUC-GGCgUACG-----GGCGCUUCGAguu -5'
24644 5' -59.3 NC_005264.1 + 81696 0.67 0.686702
Target:  5'- aUCAG-CGCGUGCCUGUGggGgUCu- -3'
miRNA:   3'- cGGUCgGCGUACGGGCGCuuCgAGuu -5'
24644 5' -59.3 NC_005264.1 + 85643 0.7 0.506464
Target:  5'- cGCUaauGGCCGCGaugGCCCGCG-AGCgCGAc -3'
miRNA:   3'- -CGG---UCGGCGUa--CGGGCGCuUCGaGUU- -5'
24644 5' -59.3 NC_005264.1 + 87425 0.68 0.59558
Target:  5'- gGCCcGCCGUAcacUGCCCGCGGccGCgCAGa -3'
miRNA:   3'- -CGGuCGGCGU---ACGGGCGCUu-CGaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.