miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 5' -59.3 NC_005264.1 + 624 0.68 0.59558
Target:  5'- cGCCGGcCCGCGUcGCaggcagCGCGAuagaGGCUCAc -3'
miRNA:   3'- -CGGUC-GGCGUA-CGg-----GCGCU----UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 1037 0.68 0.59558
Target:  5'- cGCCGGCCGUAacUGgccaCCCGgGucGCUCGg -3'
miRNA:   3'- -CGGUCGGCGU--AC----GGGCgCuuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 3432 0.68 0.605697
Target:  5'- --gGGCCGC--GCCCGCGcuGCUCGc -3'
miRNA:   3'- cggUCGGCGuaCGGGCGCuuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 6301 0.71 0.44127
Target:  5'- cCCAGCUGCAcuUGCgCgGCGAGGCUUc- -3'
miRNA:   3'- cGGUCGGCGU--ACG-GgCGCUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 9831 0.68 0.64629
Target:  5'- gGCC-GCCGCAcGUUCGCGAgaGGgUCAAg -3'
miRNA:   3'- -CGGuCGGCGUaCGGGCGCU--UCgAGUU- -5'
24644 5' -59.3 NC_005264.1 + 13365 0.66 0.726399
Target:  5'- gGCCgAGCCGgG-GCCCGCG--GCUCc- -3'
miRNA:   3'- -CGG-UCGGCgUaCGGGCGCuuCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 16481 0.73 0.349269
Target:  5'- -gCAGCCGCGgugGCCUGCGggG-UCGAg -3'
miRNA:   3'- cgGUCGGCGUa--CGGGCGCuuCgAGUU- -5'
24644 5' -59.3 NC_005264.1 + 16855 0.69 0.565411
Target:  5'- cGCCAGCCGCcgcgcaguucguAUucgcGCCgGCGAAGgUCGc -3'
miRNA:   3'- -CGGUCGGCG------------UA----CGGgCGCUUCgAGUu -5'
24644 5' -59.3 NC_005264.1 + 21202 0.66 0.755363
Target:  5'- cGUCGGCCGCAgugGUacuuucggCCGCGAcGGCUUu- -3'
miRNA:   3'- -CGGUCGGCGUa--CG--------GGCGCU-UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 22007 0.67 0.675636
Target:  5'- gGCgCGGCgCGUAgguuuuuUGCCCGCGAGcGUUCGg -3'
miRNA:   3'- -CG-GUCG-GCGU-------ACGGGCGCUU-CGAGUu -5'
24644 5' -59.3 NC_005264.1 + 27635 0.66 0.72444
Target:  5'- gGCUGGUCGCGcgaacucguuugGCCaCGCGgcGCUCGGa -3'
miRNA:   3'- -CGGUCGGCGUa-----------CGG-GCGCuuCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 27872 0.71 0.459427
Target:  5'- aGUCGGUCGCAccggauggcUGCCCGCGuuGGCUUu- -3'
miRNA:   3'- -CGGUCGGCGU---------ACGGGCGCu-UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 29408 0.67 0.696715
Target:  5'- cGCCAGCUccgggaagaaCAUGUCCGCGuAGGCUUu- -3'
miRNA:   3'- -CGGUCGGc---------GUACGGGCGC-UUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 30429 0.66 0.755363
Target:  5'- -aCAGCCGCggcuuguagcucGUGCCUGCGGccacGUUCAc -3'
miRNA:   3'- cgGUCGGCG------------UACGGGCGCUu---CGAGUu -5'
24644 5' -59.3 NC_005264.1 + 33249 0.7 0.496884
Target:  5'- cGCCGcGCCGCAgcGCCUGCaGAGCgcgCAAg -3'
miRNA:   3'- -CGGU-CGGCGUa-CGGGCGcUUCGa--GUU- -5'
24644 5' -59.3 NC_005264.1 + 36124 0.67 0.675636
Target:  5'- cGCCGGCCGaCGauuucuuUGCCCacguagcgcuguGCG-AGCUCGGg -3'
miRNA:   3'- -CGGUCGGC-GU-------ACGGG------------CGCuUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 36205 0.71 0.447579
Target:  5'- -gCAGaCCGCAUgcgcgcagaccagaGCCCGCGAGGUUUAGg -3'
miRNA:   3'- cgGUC-GGCGUA--------------CGGGCGCUUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 38119 0.7 0.506464
Target:  5'- cGCCAGgCGU-UGCCCGCGc-GCUCu- -3'
miRNA:   3'- -CGGUCgGCGuACGGGCGCuuCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 38246 0.7 0.525854
Target:  5'- aGCCAGgCGC-UGUCCGCGguGCUg-- -3'
miRNA:   3'- -CGGUCgGCGuACGGGCGCuuCGAguu -5'
24644 5' -59.3 NC_005264.1 + 39216 0.67 0.667561
Target:  5'- cGCC-GCCGCGgcgcuggcggggaggGCCUGCGuucccGGCUCGg -3'
miRNA:   3'- -CGGuCGGCGUa--------------CGGGCGCu----UCGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.