miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 5' -59.3 NC_005264.1 + 88389 1.07 0.001672
Target:  5'- gGCCAGCCGCAUGCCCGCGAAGCUCAAc -3'
miRNA:   3'- -CGGUCGGCGUACGGGCGCUUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 159840 0.73 0.334078
Target:  5'- aGCCgAGCCGCcgGCCCaGuCGgcGCUCGc -3'
miRNA:   3'- -CGG-UCGGCGuaCGGG-C-GCuuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 16481 0.73 0.349269
Target:  5'- -gCAGCCGCGgugGCCUGCGggG-UCGAg -3'
miRNA:   3'- cgGUCGGCGUa--CGGGCGCuuCgAGUU- -5'
24644 5' -59.3 NC_005264.1 + 103597 0.72 0.379466
Target:  5'- uGCUAGCCGCuaccgcgauuCCCGCGAAuuuGCUCGAg -3'
miRNA:   3'- -CGGUCGGCGuac-------GGGCGCUU---CGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 135171 0.72 0.381103
Target:  5'- gGCCAGCCGCGUaccucgguccgaGCgCCGCGuGGC-CAAa -3'
miRNA:   3'- -CGGUCGGCGUA------------CG-GGCGCuUCGaGUU- -5'
24644 5' -59.3 NC_005264.1 + 65459 0.72 0.423526
Target:  5'- uGCaCGGCCuGCggGCCUGCGA-GCUCGc -3'
miRNA:   3'- -CG-GUCGG-CGuaCGGGCGCUuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 46905 0.72 0.423526
Target:  5'- aGCUGcGCCGCGUGUUCGCGGcuCUCAAg -3'
miRNA:   3'- -CGGU-CGGCGUACGGGCGCUucGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 103372 0.71 0.432345
Target:  5'- uGCCAGUCGuCAUGCCugccgCGCGggGC-CGc -3'
miRNA:   3'- -CGGUCGGC-GUACGG-----GCGCuuCGaGUu -5'
24644 5' -59.3 NC_005264.1 + 147247 0.71 0.432345
Target:  5'- uGCCggAGCCGCAgcugcGCCCGC-AAGCUUg- -3'
miRNA:   3'- -CGG--UCGGCGUa----CGGGCGcUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 6301 0.71 0.44127
Target:  5'- cCCAGCUGCAcuUGCgCgGCGAGGCUUc- -3'
miRNA:   3'- cGGUCGGCGU--ACG-GgCGCUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 155232 0.71 0.447579
Target:  5'- -gCAGaCCGCAUgcgcgcagaccagaGCCCGCGAGGUUUAGg -3'
miRNA:   3'- cgGUC-GGCGUA--------------CGGGCGCUUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 36205 0.71 0.447579
Target:  5'- -gCAGaCCGCAUgcgcgcagaccagaGCCCGCGAGGUUUAGg -3'
miRNA:   3'- cgGUC-GGCGUA--------------CGGGCGCUUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 27872 0.71 0.459427
Target:  5'- aGUCGGUCGCAccggauggcUGCCCGCGuuGGCUUu- -3'
miRNA:   3'- -CGGUCGGCGU---------ACGGGCGCu-UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 87756 0.71 0.468654
Target:  5'- cGCCuGCCGCA-GCgCCGCGAAGaacCAGc -3'
miRNA:   3'- -CGGuCGGCGUaCG-GGCGCUUCga-GUU- -5'
24644 5' -59.3 NC_005264.1 + 95420 0.7 0.477975
Target:  5'- cGCCAGCCGCAguuUGCuCUGCGGuuGCcCGGa -3'
miRNA:   3'- -CGGUCGGCGU---ACG-GGCGCUu-CGaGUU- -5'
24644 5' -59.3 NC_005264.1 + 109589 0.7 0.487386
Target:  5'- aGCCAGacaCGC--GCCCGCGggGCa--- -3'
miRNA:   3'- -CGGUCg--GCGuaCGGGCGCuuCGaguu -5'
24644 5' -59.3 NC_005264.1 + 33249 0.7 0.496884
Target:  5'- cGCCGcGCCGCAgcGCCUGCaGAGCgcgCAAg -3'
miRNA:   3'- -CGGU-CGGCGUa-CGGGCGcUUCGa--GUU- -5'
24644 5' -59.3 NC_005264.1 + 85643 0.7 0.506464
Target:  5'- cGCUaauGGCCGCGaugGCCCGCG-AGCgCGAc -3'
miRNA:   3'- -CGG---UCGGCGUa--CGGGCGCuUCGaGUU- -5'
24644 5' -59.3 NC_005264.1 + 157146 0.7 0.506464
Target:  5'- cGCCAGgCGU-UGCCCGCGc-GCUCu- -3'
miRNA:   3'- -CGGUCgGCGuACGGGCGCuuCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 38119 0.7 0.506464
Target:  5'- cGCCAGgCGU-UGCCCGCGc-GCUCu- -3'
miRNA:   3'- -CGGUCgGCGuACGGGCGCuuCGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.