Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 162192 | 0.66 | 0.976494 |
Target: 5'- gGggGGGGCGCGUGAGccucuaucgcgcUGCCuGcGACg -3' miRNA: 3'- -CuaCUCCGCGCGCUC------------AUGGuCuUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 161993 | 0.72 | 0.778913 |
Target: 5'- gGggGAGGCGgauCGUGGGgcacGCCAGAGACa -3' miRNA: 3'- -CuaCUCCGC---GCGCUCa---UGGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 150797 | 0.68 | 0.913514 |
Target: 5'- --gGGGGCGUGUGGGg--CAGGAGCg -3' miRNA: 3'- cuaCUCCGCGCGCUCaugGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 148651 | 0.68 | 0.913514 |
Target: 5'- cGAUGGGGCGacgGCGAucGCCAccGAGGCg -3' miRNA: 3'- -CUACUCCGCg--CGCUcaUGGU--CUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 146319 | 0.66 | 0.971076 |
Target: 5'- -uUGAGGCGUGCuuGUACCAu----- -3' miRNA: 3'- cuACUCCGCGCGcuCAUGGUcuuuga -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 130269 | 0.67 | 0.94516 |
Target: 5'- ---cGGGUGCGCGAcGUugCGGcgGCUa -3' miRNA: 3'- cuacUCCGCGCGCU-CAugGUCuuUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 124333 | 0.66 | 0.964814 |
Target: 5'- cGUGGGGCGgGCGAcuggcgggaGUACgGGgAGACg -3' miRNA: 3'- cUACUCCGCgCGCU---------CAUGgUC-UUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 114306 | 0.78 | 0.45518 |
Target: 5'- --gGGGGCGCGCGGGacgACgCGGAAACUu -3' miRNA: 3'- cuaCUCCGCGCGCUCa--UG-GUCUUUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 106458 | 0.68 | 0.918834 |
Target: 5'- --gGAGGCGCGCugguucgGAGgACCuGAAACc -3' miRNA: 3'- cuaCUCCGCGCG-------CUCaUGGuCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 106247 | 0.7 | 0.833053 |
Target: 5'- aGAUGGGcCGCGCGuAGcGCCAGAAAa- -3' miRNA: 3'- -CUACUCcGCGCGC-UCaUGGUCUUUga -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 97213 | 0.67 | 0.94516 |
Target: 5'- cGGUGc-GCGCGCGGGUACCcacGAGCc -3' miRNA: 3'- -CUACucCGCGCGCUCAUGGuc-UUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 96894 | 0.66 | 0.973887 |
Target: 5'- cAUGGcGGCGCGCGAGgGCgCGGcAAAUc -3' miRNA: 3'- cUACU-CCGCGCGCUCaUG-GUC-UUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 95771 | 0.67 | 0.940508 |
Target: 5'- --cGcGGCGUGCGAGUAcucguuCCAGgcGCUu -3' miRNA: 3'- cuaCuCCGCGCGCUCAU------GGUCuuUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 94479 | 0.67 | 0.94516 |
Target: 5'- --cGAGGuCGUGCGc--ACCAGGAACa -3' miRNA: 3'- cuaCUCC-GCGCGCucaUGGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 93593 | 1.08 | 0.006035 |
Target: 5'- gGAUGAGGCGCGCGAGUACCAGAAACUa -3' miRNA: 3'- -CUACUCCGCGCGCUCAUGGUCUUUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 85828 | 0.66 | 0.973887 |
Target: 5'- --aGAaGCGCGCGcucAGUACCGGGucuuGCg -3' miRNA: 3'- cuaCUcCGCGCGC---UCAUGGUCUu---UGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 81902 | 0.66 | 0.964814 |
Target: 5'- cGAUG-GGCGgGCGA--GCCAGcaGAACg -3' miRNA: 3'- -CUACuCCGCgCGCUcaUGGUC--UUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 80204 | 0.67 | 0.953733 |
Target: 5'- --aGAGGCGCGgGAcguGUGugAGAAGCUu -3' miRNA: 3'- cuaCUCCGCGCgCU---CAUggUCUUUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 79434 | 0.66 | 0.964814 |
Target: 5'- cGUG-GGCgGUGCGGGgucuCCGGggGCa -3' miRNA: 3'- cUACuCCG-CGCGCUCau--GGUCuuUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 77061 | 0.7 | 0.849664 |
Target: 5'- --aGAGGCGCGCGAGcUACUAa----- -3' miRNA: 3'- cuaCUCCGCGCGCUC-AUGGUcuuuga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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