Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 19423 | 0.68 | 0.919412 |
Target: 5'- --cGAGGCGC-CGGGUgugGCCGcGggGCg -3' miRNA: 3'- cuaCUCCGCGcGCUCA---UGGU-CuuUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 106458 | 0.68 | 0.918834 |
Target: 5'- --gGAGGCGCGCugguucgGAGgACCuGAAACc -3' miRNA: 3'- cuaCUCCGCGCG-------CUCaUGGuCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 148651 | 0.68 | 0.913514 |
Target: 5'- cGAUGGGGCGacgGCGAucGCCAccGAGGCg -3' miRNA: 3'- -CUACUCCGCg--CGCUcaUGGU--CUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 150797 | 0.68 | 0.913514 |
Target: 5'- --gGGGGCGUGUGGGg--CAGGAGCg -3' miRNA: 3'- cuaCUCCGCGCGCUCaugGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 49614 | 0.69 | 0.907368 |
Target: 5'- --cGGGGgGCGCucggugGGGUACCAGggGg- -3' miRNA: 3'- cuaCUCCgCGCG------CUCAUGGUCuuUga -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 72809 | 0.69 | 0.897025 |
Target: 5'- -uUGAGcaaucuccccaucaaGCGCGCGAcaACCGGAAACg -3' miRNA: 3'- cuACUC---------------CGCGCGCUcaUGGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 44535 | 0.69 | 0.894342 |
Target: 5'- --cGAcGCGCGCGAGUACaucaccGAGACg -3' miRNA: 3'- cuaCUcCGCGCGCUCAUGgu----CUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 77061 | 0.7 | 0.849664 |
Target: 5'- --aGAGGCGCGCGAGcUACUAa----- -3' miRNA: 3'- cuaCUCCGCGCGCUC-AUGGUcuuuga -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 54577 | 0.7 | 0.841458 |
Target: 5'- cGUGGGGCGCGaCGGGU--CGGAGAUg -3' miRNA: 3'- cUACUCCGCGC-GCUCAugGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 106247 | 0.7 | 0.833053 |
Target: 5'- aGAUGGGcCGCGCGuAGcGCCAGAAAa- -3' miRNA: 3'- -CUACUCcGCGCGC-UCaUGGUCUUUga -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 48392 | 0.71 | 0.815679 |
Target: 5'- -cUGGGGCGUcggGCGGcgGCCAGGAGCg -3' miRNA: 3'- cuACUCCGCG---CGCUcaUGGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 69277 | 0.71 | 0.806727 |
Target: 5'- cAUGGGGCGCGCGAa-ACaAGGAGCUu -3' miRNA: 3'- cUACUCCGCGCGCUcaUGgUCUUUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 161993 | 0.72 | 0.778913 |
Target: 5'- gGggGAGGCGgauCGUGGGgcacGCCAGAGACa -3' miRNA: 3'- -CuaCUCCGC---GCGCUCa---UGGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 45570 | 0.73 | 0.719838 |
Target: 5'- cGUGucGGCGCGCacGAGUcccucggauACCAGAAACUg -3' miRNA: 3'- cUACu-CCGCGCG--CUCA---------UGGUCUUUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 75855 | 0.74 | 0.657928 |
Target: 5'- --cGAGGCGCuGCGAcu-CCAGAAACa -3' miRNA: 3'- cuaCUCCGCG-CGCUcauGGUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 50563 | 0.74 | 0.626555 |
Target: 5'- ---uAGGCGCGCGcGUGCgGGAAGCg -3' miRNA: 3'- cuacUCCGCGCGCuCAUGgUCUUUGa -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 114306 | 0.78 | 0.45518 |
Target: 5'- --gGGGGCGCGCGGGacgACgCGGAAACUu -3' miRNA: 3'- cuaCUCCGCGCGCUCa--UG-GUCUUUGA- -5' |
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24654 | 5' | -53.1 | NC_005264.1 | + | 93593 | 1.08 | 0.006035 |
Target: 5'- gGAUGAGGCGCGCGAGUACCAGAAACUa -3' miRNA: 3'- -CUACUCCGCGCGCUCAUGGUCUUUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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