miRNA display CGI


Results 21 - 40 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 16563 0.66 0.70152
Target:  5'- gCGGUGGGCGGCGCcgggGCgGCgGcGCa -3'
miRNA:   3'- gGCUGCCCGCCGCGca--CGgCGgUuUG- -5'
24658 3' -61.2 NC_005264.1 + 16766 0.71 0.437384
Target:  5'- cCCGcGCGGG-GGCGCGcUGUUcggGCCGGACg -3'
miRNA:   3'- -GGC-UGCCCgCCGCGC-ACGG---CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 17018 0.66 0.748568
Target:  5'- aCGGCaaaGGCGGCGaucGUCGCCAGcaGCg -3'
miRNA:   3'- gGCUGc--CCGCCGCgcaCGGCGGUU--UG- -5'
24658 3' -61.2 NC_005264.1 + 18009 0.66 0.711067
Target:  5'- uCUGAC-GGCGGCGgGUcgGCCGCgGu-- -3'
miRNA:   3'- -GGCUGcCCGCCGCgCA--CGGCGgUuug -5'
24658 3' -61.2 NC_005264.1 + 18044 0.67 0.653139
Target:  5'- gCCGACGcgaagcGGCGGCGCc-GCgaGCCAGGg -3'
miRNA:   3'- -GGCUGC------CCGCCGCGcaCGg-CGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 19039 0.66 0.708209
Target:  5'- aCGGCaGGCGGgaaaGCGUucgugacuaagcccGCCGCgGGGCa -3'
miRNA:   3'- gGCUGcCCGCCg---CGCA--------------CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 20133 0.68 0.614113
Target:  5'- aCGauGCGGGCaGGCgaugGCGcGCCGCCGGc- -3'
miRNA:   3'- gGC--UGCCCG-CCG----CGCaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 21904 0.66 0.70152
Target:  5'- -----cGGCGGCGCGUGCgGUCGuaguGCu -3'
miRNA:   3'- ggcugcCCGCCGCGCACGgCGGUu---UG- -5'
24658 3' -61.2 NC_005264.1 + 22050 0.69 0.556061
Target:  5'- aCCGACGccuuGGaCGGUaGCGccGCCGCCGGAa -3'
miRNA:   3'- -GGCUGC----CC-GCCG-CGCa-CGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 22841 0.67 0.671619
Target:  5'- -aGACGGGUacggacgGGCGag-GCCGCgCGAACc -3'
miRNA:   3'- ggCUGCCCG-------CCGCgcaCGGCG-GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 25538 0.7 0.508931
Target:  5'- gCGAUGGGUGccguacgccCGCGUcGCCGCCAAc- -3'
miRNA:   3'- gGCUGCCCGCc--------GCGCA-CGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 25998 0.75 0.250055
Target:  5'- -aGACGGGUacaguaucGGCGCGUGgcuguaaUCGCCAAGCg -3'
miRNA:   3'- ggCUGCCCG--------CCGCGCAC-------GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 26368 0.66 0.691919
Target:  5'- gCGGCaGGCuGCGCGgcGCCGUCucuGAGCg -3'
miRNA:   3'- gGCUGcCCGcCGCGCa-CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 30108 0.74 0.31353
Target:  5'- gUCGagauGCGGGCGGCGCG-GCa-CCGAGCu -3'
miRNA:   3'- -GGC----UGCCCGCCGCGCaCGgcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 30853 0.7 0.499701
Target:  5'- gUCGGC-GGCGGCGC--GCCGCCcgguAGGCa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcaCGGCGG----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 31199 0.67 0.682273
Target:  5'- -gGACGGGgGGCuGCG-GCCcuCCAGAg -3'
miRNA:   3'- ggCUGCCCgCCG-CGCaCGGc-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 31605 0.73 0.349207
Target:  5'- uCUGGCGaGGCGGCGCGcaUCGCCcuGCg -3'
miRNA:   3'- -GGCUGC-CCGCCGCGCacGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 31793 0.68 0.594647
Target:  5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3'
miRNA:   3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 31970 0.68 0.594647
Target:  5'- gCGACGGGCcGCGUGUccgauGCgCGCUAcAGCg -3'
miRNA:   3'- gGCUGCCCGcCGCGCA-----CG-GCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 32386 0.68 0.584948
Target:  5'- gCCGGCGGcCGGCGUccGCCGC--GACu -3'
miRNA:   3'- -GGCUGCCcGCCGCGcaCGGCGguUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.