miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 135 0.66 0.70152
Target:  5'- cCCGGCGGccgccuuaacGcCGGCGCGcaGCgCGCCGAc- -3'
miRNA:   3'- -GGCUGCC----------C-GCCGCGCa-CG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 2897 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 3541 0.66 0.691919
Target:  5'- gCGACGcGGCGGCGUccagcaucucucGUGCCacuuccuccGCguAACg -3'
miRNA:   3'- gGCUGC-CCGCCGCG------------CACGG---------CGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 3629 0.66 0.691919
Target:  5'- -gGGCGGGCGcGCugacauucgucGCGaugGCCGCCGu-- -3'
miRNA:   3'- ggCUGCCCGC-CG-----------CGCa--CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 3670 0.72 0.387684
Target:  5'- aCGAUGGGCGGC-CGUcucgGCgGCgAGACg -3'
miRNA:   3'- gGCUGCCCGCCGcGCA----CGgCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 3739 0.67 0.662876
Target:  5'- aCGACgaGGaGCGGgGCcucuUGCCGCCGGGg -3'
miRNA:   3'- gGCUG--CC-CGCCgCGc---ACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 4439 0.68 0.57528
Target:  5'- gUGACGGGCGGCGgGcauauacgGCUcccauaggcgagGCUAAGCg -3'
miRNA:   3'- gGCUGCCCGCCGCgCa-------CGG------------CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 5143 0.67 0.6307
Target:  5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3'
miRNA:   3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 5260 0.66 0.729972
Target:  5'- gCGcCGGGaGGCGaGUcGCgGCCGGACg -3'
miRNA:   3'- gGCuGCCCgCCGCgCA-CGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 5809 0.69 0.54652
Target:  5'- aCGGCGuucaauaguccGGCGGCG-GUgGCCGCCAcuCg -3'
miRNA:   3'- gGCUGC-----------CCGCCGCgCA-CGGCGGUuuG- -5'
24658 3' -61.2 NC_005264.1 + 6011 0.66 0.711067
Target:  5'- cCCGACGGGCGGgGag-GCU-CCGGGg -3'
miRNA:   3'- -GGCUGCCCGCCgCgcaCGGcGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 6868 0.68 0.594647
Target:  5'- gUCGuGCGGGCuuguuucucGGCGCGUGuuGCUg--- -3'
miRNA:   3'- -GGC-UGCCCG---------CCGCGCACggCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 7864 0.66 0.691919
Target:  5'- uUGugGgGGCGGCGuCGgcGCC-CCAGAUg -3'
miRNA:   3'- gGCugC-CCGCCGC-GCa-CGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 8376 0.75 0.268329
Target:  5'- aCCGGCGccggacGCGGCGCGUugaaGCUGCCGGAg -3'
miRNA:   3'- -GGCUGCc-----CGCCGCGCA----CGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 9741 0.66 0.739312
Target:  5'- uCUGACucGGCGGCagGCaaGCCGCCGuGCu -3'
miRNA:   3'- -GGCUGc-CCGCCG--CGcaCGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 11067 0.66 0.739312
Target:  5'- gUGACGua-GGCGgGUGCCGCCc--- -3'
miRNA:   3'- gGCUGCccgCCGCgCACGGCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 12013 0.67 0.662876
Target:  5'- aCGACcugcGGCGGCGaccGCCGCCcuuAGGCg -3'
miRNA:   3'- gGCUGc---CCGCCGCgcaCGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 12538 0.66 0.720554
Target:  5'- gCCGguaggaGCGGGgGGCGUucGCCGCgAAGa -3'
miRNA:   3'- -GGC------UGCCCgCCGCGcaCGGCGgUUUg -5'
24658 3' -61.2 NC_005264.1 + 12952 0.83 0.079559
Target:  5'- gCCGuugccuacCGGGCGGCGCGcGCCGCCGacGACg -3'
miRNA:   3'- -GGCu-------GCCCGCCGCGCaCGGCGGU--UUG- -5'
24658 3' -61.2 NC_005264.1 + 14043 0.73 0.327461
Target:  5'- uCCgGACGuGGCGGgGCcgggugggaacGUGCaCGCCAGACu -3'
miRNA:   3'- -GG-CUGC-CCGCCgCG-----------CACG-GCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.