miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 95358 1.1 0.001013
Target:  5'- gCCGACGGGCGGCGCGUGCCGCCAAACu -3'
miRNA:   3'- -GGCUGCCCGCCGCGCACGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 90456 0.83 0.075607
Target:  5'- -aGGUGGGCGGCGCG-GCCGUCAAACa -3'
miRNA:   3'- ggCUGCCCGCCGCGCaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 12952 0.83 0.079559
Target:  5'- gCCGuugccuacCGGGCGGCGCGcGCCGCCGacGACg -3'
miRNA:   3'- -GGCu-------GCCCGCCGCGCaCGGCGGU--UUG- -5'
24658 3' -61.2 NC_005264.1 + 97786 0.82 0.084993
Target:  5'- -gGAUGGGCGGCGCGgcguaaugaguagGCUGCCGAACc -3'
miRNA:   3'- ggCUGCCCGCCGCGCa------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 131978 0.81 0.11046
Target:  5'- gCCGuugccuacCGGGCGGCGCGccGCCGCCGacGACg -3'
miRNA:   3'- -GGCu-------GCCCGCCGCGCa-CGGCGGU--UUG- -5'
24658 3' -61.2 NC_005264.1 + 66198 0.78 0.167873
Target:  5'- aUCGGCGGGCGGUGCGccuccGCgGCCAGc- -3'
miRNA:   3'- -GGCUGCCCGCCGCGCa----CGgCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 69398 0.77 0.184821
Target:  5'- aCGAUGGGCggguaGGCGCGccUGCCGCCGu-- -3'
miRNA:   3'- gGCUGCCCG-----CCGCGC--ACGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 64688 0.76 0.208115
Target:  5'- gCCGGCGGGCaGGC-CGUGCuCGCCcGAAUc -3'
miRNA:   3'- -GGCUGCCCG-CCGcGCACG-GCGG-UUUG- -5'
24658 3' -61.2 NC_005264.1 + 72904 0.76 0.223277
Target:  5'- gCCGAUGGGCGGaaugaGCGacacguugcUGCCGUUGAGCa -3'
miRNA:   3'- -GGCUGCCCGCCg----CGC---------ACGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 103720 0.76 0.233359
Target:  5'- gCGGCGGcGCGGCaucagcgGCGgcgGCCGCCAuGCu -3'
miRNA:   3'- gGCUGCC-CGCCG-------CGCa--CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 25998 0.75 0.250055
Target:  5'- -aGACGGGUacaguaucGGCGCGUGgcuguaaUCGCCAAGCg -3'
miRNA:   3'- ggCUGCCCG--------CCGCGCAC-------GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 148283 0.75 0.250055
Target:  5'- cCCGGCGGGagauucuggagacCGcGCGCGUGCgCGCCGGu- -3'
miRNA:   3'- -GGCUGCCC-------------GC-CGCGCACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 162668 0.75 0.26471
Target:  5'- gCCGGCGGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGCCCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 127403 0.75 0.268329
Target:  5'- aCCGGCGccggacGCGGCGCGUugaaGCUGCCGGAg -3'
miRNA:   3'- -GGCUGCc-----CGCCGCGCA----CGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 8376 0.75 0.268329
Target:  5'- aCCGGCGccggacGCGGCGCGUugaaGCUGCCGGAg -3'
miRNA:   3'- -GGCUGCc-----CGCCGCGCA----CGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 66695 0.74 0.293483
Target:  5'- gCCgGGCGGGgGGCGUacuacGUGUCGCCGGGg -3'
miRNA:   3'- -GG-CUGCCCgCCGCG-----CACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 30108 0.74 0.31353
Target:  5'- gUCGagauGCGGGCGGCGCG-GCa-CCGAGCu -3'
miRNA:   3'- -GGC----UGCCCGCCGCGCaCGgcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 14043 0.73 0.327461
Target:  5'- uCCgGACGuGGCGGgGCcgggugggaacGUGCaCGCCAGACu -3'
miRNA:   3'- -GG-CUGC-CCGCCgCG-----------CACG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 90965 0.73 0.327461
Target:  5'- gCGuCGGGCGccCGCGUGCCGUCGcggAACa -3'
miRNA:   3'- gGCuGCCCGCc-GCGCACGGCGGU---UUG- -5'
24658 3' -61.2 NC_005264.1 + 91027 0.73 0.341845
Target:  5'- cCCG-CGGGCGGCuuCG-GCCGCUAuGCg -3'
miRNA:   3'- -GGCuGCCCGCCGc-GCaCGGCGGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.