miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 95358 1.1 0.001013
Target:  5'- gCCGACGGGCGGCGCGUGCCGCCAAACu -3'
miRNA:   3'- -GGCUGCCCGCCGCGCACGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 54227 0.7 0.490546
Target:  5'- aCGGCGGcCGGUGCGUuCaCGCUAGGCu -3'
miRNA:   3'- gGCUGCCcGCCGCGCAcG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 149879 0.7 0.499701
Target:  5'- gUCGGC-GGCGGCGC--GCCGCCcgguAGGCa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcaCGGCGG----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 73369 0.66 0.748568
Target:  5'- aCGcGCGGuGCuuuuGGCGCGgcuCUGCCAAGCc -3'
miRNA:   3'- gGC-UGCC-CG----CCGCGCac-GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 148283 0.75 0.250055
Target:  5'- cCCGGCGGGagauucuggagacCGcGCGCGUGCgCGCCGGu- -3'
miRNA:   3'- -GGCUGCCC-------------GC-CGCGCACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 162668 0.75 0.26471
Target:  5'- gCCGGCGGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGCCCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 30108 0.74 0.31353
Target:  5'- gUCGagauGCGGGCGGCGCG-GCa-CCGAGCu -3'
miRNA:   3'- -GGC----UGCCCGCCGCGCaCGgcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 14043 0.73 0.327461
Target:  5'- uCCgGACGuGGCGGgGCcgggugggaacGUGCaCGCCAGACu -3'
miRNA:   3'- -GG-CUGC-CCGCCgCG-----------CACG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 90385 0.72 0.379769
Target:  5'- uCCGACcGGCGGCGC---CCGCCGAuACa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGCGGUU-UG- -5'
24658 3' -61.2 NC_005264.1 + 146671 0.7 0.463566
Target:  5'- aCCGACcuccgcgcaGGGCGGCau-UGCCGCCcuGCg -3'
miRNA:   3'- -GGCUG---------CCCGCCGcgcACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 43234 0.71 0.420408
Target:  5'- --uGCaGGCGGCaCGUGCCGCCuGGACu -3'
miRNA:   3'- ggcUGcCCGCCGcGCACGGCGG-UUUG- -5'
24658 3' -61.2 NC_005264.1 + 68259 0.72 0.379769
Target:  5'- gCCG-CGGGCGGCcugcuGC-UGCCGCCucuuuGCg -3'
miRNA:   3'- -GGCuGCCCGCCG-----CGcACGGCGGuu---UG- -5'
24658 3' -61.2 NC_005264.1 + 131978 0.81 0.11046
Target:  5'- gCCGuugccuacCGGGCGGCGCGccGCCGCCGacGACg -3'
miRNA:   3'- -GGCu-------GCCCGCCGCGCa-CGGCGGU--UUG- -5'
24658 3' -61.2 NC_005264.1 + 16766 0.71 0.437384
Target:  5'- cCCGcGCGGG-GGCGCGcUGUUcggGCCGGACg -3'
miRNA:   3'- -GGC-UGCCCgCCGCGC-ACGG---CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 66198 0.78 0.167873
Target:  5'- aUCGGCGGGCGGUGCGccuccGCgGCCAGc- -3'
miRNA:   3'- -GGCUGCCCGCCGCGCa----CGgCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 150632 0.73 0.349207
Target:  5'- uCUGGCGaGGCGGCGCGcaUCGCCcuGCg -3'
miRNA:   3'- -GGCUGC-CCGCCGCGCacGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 58365 0.7 0.463566
Target:  5'- uCUGGCGGGgcCGGCGCGauaUGC-GCCGGAUu -3'
miRNA:   3'- -GGCUGCCC--GCCGCGC---ACGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 62923 0.7 0.499701
Target:  5'- gCCGcGCGGGCuuGCGCG-GCCG-CAAGCc -3'
miRNA:   3'- -GGC-UGCCCGc-CGCGCaCGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 64688 0.76 0.208115
Target:  5'- gCCGGCGGGCaGGC-CGUGCuCGCCcGAAUc -3'
miRNA:   3'- -GGCUGCCCG-CCGcGCACG-GCGG-UUUG- -5'
24658 3' -61.2 NC_005264.1 + 127403 0.75 0.268329
Target:  5'- aCCGGCGccggacGCGGCGCGUugaaGCUGCCGGAg -3'
miRNA:   3'- -GGCUGCc-----CGCCGCGCA----CGGCGGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.