miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 73369 0.66 0.748568
Target:  5'- aCGcGCGGuGCuuuuGGCGCGgcuCUGCCAAGCc -3'
miRNA:   3'- gGC-UGCC-CG----CCGCGCac-GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 155895 0.66 0.729972
Target:  5'- gUGACGGuGCGGCGCGacGUauuaGCUcaAGACa -3'
miRNA:   3'- gGCUGCC-CGCCGCGCa-CGg---CGG--UUUG- -5'
24658 3' -61.2 NC_005264.1 + 151301 0.66 0.729033
Target:  5'- cCCGGgGGGCaGCGUacGUGUuauccugCGCCAAAa -3'
miRNA:   3'- -GGCUgCCCGcCGCG--CACG-------GCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 86972 0.66 0.727154
Target:  5'- -aGACGGGgGGCGUaagcgcgccuucaaGggGCCaGUCAAGCa -3'
miRNA:   3'- ggCUGCCCgCCGCG--------------Ca-CGG-CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 119433 0.66 0.720554
Target:  5'- gCUGGCGGGCGaucuCGCugcccagGCCGCCcacAGACu -3'
miRNA:   3'- -GGCUGCCCGCc---GCGca-----CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 12538 0.66 0.720554
Target:  5'- gCCGguaggaGCGGGgGGCGUucGCCGCgAAGa -3'
miRNA:   3'- -GGC------UGCCCgCCGCGcaCGGCGgUUUg -5'
24658 3' -61.2 NC_005264.1 + 120789 0.66 0.717715
Target:  5'- gCCG-CGGGCaacgcgauuggauaGGcCGCGUGCgCGUCGAc- -3'
miRNA:   3'- -GGCuGCCCG--------------CC-GCGCACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 150714 0.66 0.716767
Target:  5'- gCCGGCGGaggaaucGUcaguuuuucucgcgGGgGUGUGCaCGCCAGGCu -3'
miRNA:   3'- -GGCUGCC-------CG--------------CCgCGCACG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 69035 0.66 0.711067
Target:  5'- aCGGCGaGUcgaucucuuuGGcCGCG-GCCGCCGGGCa -3'
miRNA:   3'- gGCUGCcCG----------CC-GCGCaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 5260 0.66 0.729972
Target:  5'- gCGcCGGGaGGCGaGUcGCgGCCGGACg -3'
miRNA:   3'- gGCuGCCCgCCGCgCA-CGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43789 0.66 0.738382
Target:  5'- gCCGugGGuGCGGgGCGcaguuucUGUCGCgAuauAGCg -3'
miRNA:   3'- -GGCugCC-CGCCgCGC-------ACGGCGgU---UUG- -5'
24658 3' -61.2 NC_005264.1 + 39091 0.66 0.739312
Target:  5'- cUCGGCGGGCaGCgGCGUcuggaccagcuGCUGUCGugGACg -3'
miRNA:   3'- -GGCUGCCCGcCG-CGCA-----------CGGCGGU--UUG- -5'
24658 3' -61.2 NC_005264.1 + 95634 0.66 0.747647
Target:  5'- cCCGACGGuucccacuauagGCGcCGCGUcauagcgcugcagGCCGCCAu-- -3'
miRNA:   3'- -GGCUGCC------------CGCcGCGCA-------------CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 72495 0.66 0.745801
Target:  5'- gUCGGCGGGuugaagaucugcgcCgagaGGCGCGUGgCGCUuuGCa -3'
miRNA:   3'- -GGCUGCCC--------------G----CCGCGCACgGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 156429 0.66 0.739312
Target:  5'- gCGGCuGGCGGCG-GUGaUCGCCucGAUa -3'
miRNA:   3'- gGCUGcCCGCCGCgCAC-GGCGGu-UUG- -5'
24658 3' -61.2 NC_005264.1 + 93864 0.66 0.739312
Target:  5'- gCGGCGGGUaGU-CGUGCCGUggCAGGCc -3'
miRNA:   3'- gGCUGCCCGcCGcGCACGGCG--GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 82262 0.66 0.739312
Target:  5'- gCGACaGGCGGCaccggagcGCGaaggGuCCGCCGAGa -3'
miRNA:   3'- gGCUGcCCGCCG--------CGCa---C-GGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 54913 0.66 0.739312
Target:  5'- gCGAaGGucGCGGCGC-UGCUGgCGAACg -3'
miRNA:   3'- gGCUgCC--CGCCGCGcACGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 11067 0.66 0.739312
Target:  5'- gUGACGua-GGCGgGUGCCGCCc--- -3'
miRNA:   3'- gGCUGCccgCCGCgCACGGCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 104922 0.66 0.739312
Target:  5'- -aGACaaGGCGGCGgaacccccagcCGUGCCaagcGCCGAGCc -3'
miRNA:   3'- ggCUGc-CCGCCGC-----------GCACGG----CGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.