Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24663 | 3' | -49 | NC_005264.1 | + | 51599 | 0.66 | 0.999144 |
Target: 5'- gUGAAagaugGUUUGUAUGGCCGGGgagguguaGGCCg- -3' miRNA: 3'- -ACUU-----UAAACAUGCUGGCUUg-------CCGGga -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 4290 | 0.66 | 0.999144 |
Target: 5'- ------aUGgcUGGCCaguaaGAGCGGCCCUg -3' miRNA: 3'- acuuuaaACauGCUGG-----CUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 149934 | 0.66 | 0.998458 |
Target: 5'- gGGGAggacUGCGagGCCGGGCGGCUCg -3' miRNA: 3'- aCUUUaaacAUGC--UGGCUUGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 156148 | 0.66 | 0.998953 |
Target: 5'- cGAGGgcgagGCGGCCGucuCGGCCUc -3' miRNA: 3'- aCUUUaaacaUGCUGGCuu-GCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 124292 | 0.66 | 0.998458 |
Target: 5'- gGGAGgcgaGUcGCGGCCGGACGGCg-- -3' miRNA: 3'- aCUUUaaa-CA-UGCUGGCUUGCCGgga -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 136239 | 0.66 | 0.999144 |
Target: 5'- cGAGGUg---GCGACgGAcACGGCUCa -3' miRNA: 3'- aCUUUAaacaUGCUGgCU-UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 108362 | 0.66 | 0.999305 |
Target: 5'- aGGGAUgacaUGgGCGAC--GACGGCCCUu -3' miRNA: 3'- aCUUUAa---ACaUGCUGgcUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 13501 | 0.66 | 0.99929 |
Target: 5'- gGGGAUg---GCGGuaaaucguccaacUCGAACGGCCCg -3' miRNA: 3'- aCUUUAaacaUGCU-------------GGCUUGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 105820 | 0.66 | 0.999144 |
Target: 5'- gGAAAUgguuaugGUAuCGGCgGAACGGUUCUc -3' miRNA: 3'- aCUUUAaa-----CAU-GCUGgCUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 146421 | 0.66 | 0.999144 |
Target: 5'- ---------cGCGGCaguCGAGCGGCCCUu -3' miRNA: 3'- acuuuaaacaUGCUG---GCUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 143863 | 0.66 | 0.999144 |
Target: 5'- cGGAug-UGUgcccggGCGAUCGuuuccGCGGCCCa -3' miRNA: 3'- aCUUuaaACA------UGCUGGCu----UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 37121 | 0.66 | 0.998953 |
Target: 5'- cGAGGgcgagGCGGCCGucuCGGCCUc -3' miRNA: 3'- aCUUUaaacaUGCUGGCuu-GCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 30908 | 0.66 | 0.998458 |
Target: 5'- gGGGAggacUGCGagGCCGGGCGGCUCg -3' miRNA: 3'- aCUUUaaacAUGC--UGGCUUGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 20632 | 0.66 | 0.998458 |
Target: 5'- aGggGcacUGgGCGACCGuugGCGGUCCa -3' miRNA: 3'- aCuuUaa-ACaUGCUGGCu--UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 5265 | 0.66 | 0.998458 |
Target: 5'- gGGAGgcgaGUcGCGGCCGGACGGCg-- -3' miRNA: 3'- aCUUUaaa-CA-UGCUGGCUUGCCGgga -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 141624 | 0.66 | 0.999305 |
Target: 5'- gGAAAgccGUcGCGGCCGAaaguaccacuGCGGCCg- -3' miRNA: 3'- aCUUUaaaCA-UGCUGGCU----------UGCCGGga -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 18666 | 0.67 | 0.997355 |
Target: 5'- aUGAGGUcacaugGUGCGAuuCCGGACaccccauuGGCCCa -3' miRNA: 3'- -ACUUUAaa----CAUGCU--GGCUUG--------CCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 28429 | 0.67 | 0.997355 |
Target: 5'- -------gGUAgGACCGAACGGCagCUg -3' miRNA: 3'- acuuuaaaCAUgCUGGCUUGCCGg-GA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 27973 | 0.67 | 0.997779 |
Target: 5'- gGAAAcgcgUGacgACGACCGccguagccGCGGCCCa -3' miRNA: 3'- aCUUUaa--ACa--UGCUGGCu-------UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 116656 | 0.67 | 0.996866 |
Target: 5'- cGAGGUUguagAUGGCgGGGCGGCCg- -3' miRNA: 3'- aCUUUAAaca-UGCUGgCUUGCCGGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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