Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24663 | 3' | -49 | NC_005264.1 | + | 28429 | 0.67 | 0.997355 |
Target: 5'- -------gGUAgGACCGAACGGCagCUg -3' miRNA: 3'- acuuuaaaCAUgCUGGCUUGCCGg-GA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 40196 | 0.68 | 0.994104 |
Target: 5'- aGGuguAUggGUA-GACCGAGCGGgCCUg -3' miRNA: 3'- aCUu--UAaaCAUgCUGGCUUGCCgGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 119912 | 0.71 | 0.967276 |
Target: 5'- -------cGUACGACUGGguguACGGCCCc -3' miRNA: 3'- acuuuaaaCAUGCUGGCU----UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 242 | 0.73 | 0.928186 |
Target: 5'- aUGAGGUUUGUGCGgcggcGCUGGACGcggcagaaGCCCa -3' miRNA: 3'- -ACUUUAAACAUGC-----UGGCUUGC--------CGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 101162 | 1.09 | 0.014095 |
Target: 5'- gUGAAAUUUGUACGACCGAACGGCCCUg -3' miRNA: 3'- -ACUUUAAACAUGCUGGCUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 149934 | 0.66 | 0.998458 |
Target: 5'- gGGGAggacUGCGagGCCGGGCGGCUCg -3' miRNA: 3'- aCUUUaaacAUGC--UGGCUUGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 141624 | 0.66 | 0.999305 |
Target: 5'- gGAAAgccGUcGCGGCCGAaaguaccacuGCGGCCg- -3' miRNA: 3'- aCUUUaaaCA-UGCUGGCU----------UGCCGGga -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 136239 | 0.66 | 0.999144 |
Target: 5'- cGAGGUg---GCGACgGAcACGGCUCa -3' miRNA: 3'- aCUUUAaacaUGCUGgCU-UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 105820 | 0.66 | 0.999144 |
Target: 5'- gGAAAUgguuaugGUAuCGGCgGAACGGUUCUc -3' miRNA: 3'- aCUUUAaa-----CAU-GCUGgCUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 156148 | 0.66 | 0.998953 |
Target: 5'- cGAGGgcgagGCGGCCGucuCGGCCUc -3' miRNA: 3'- aCUUUaaacaUGCUGGCuu-GCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 18666 | 0.67 | 0.997355 |
Target: 5'- aUGAGGUcacaugGUGCGAuuCCGGACaccccauuGGCCCa -3' miRNA: 3'- -ACUUUAaa----CAUGCU--GGCUUG--------CCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 13501 | 0.66 | 0.99929 |
Target: 5'- gGGGAUg---GCGGuaaaucguccaacUCGAACGGCCCg -3' miRNA: 3'- aCUUUAaacaUGCU-------------GGCUUGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 27973 | 0.67 | 0.997779 |
Target: 5'- gGAAAcgcgUGacgACGACCGccguagccGCGGCCCa -3' miRNA: 3'- aCUUUaa--ACa--UGCUGGCu-------UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 4290 | 0.66 | 0.999144 |
Target: 5'- ------aUGgcUGGCCaguaaGAGCGGCCCUg -3' miRNA: 3'- acuuuaaACauGCUGG-----CUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 108362 | 0.66 | 0.999305 |
Target: 5'- aGGGAUgacaUGgGCGAC--GACGGCCCUu -3' miRNA: 3'- aCUUUAa---ACaUGCUGgcUUGCCGGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 124292 | 0.66 | 0.998458 |
Target: 5'- gGGAGgcgaGUcGCGGCCGGACGGCg-- -3' miRNA: 3'- aCUUUaaa-CA-UGCUGGCUUGCCGgga -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 72376 | 0.68 | 0.995662 |
Target: 5'- uUGGAcUUUGUuugACGGCCGcGCcGCCCa -3' miRNA: 3'- -ACUUuAAACA---UGCUGGCuUGcCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 886 | 0.71 | 0.967276 |
Target: 5'- -------cGUACGACUGGguguACGGCCCc -3' miRNA: 3'- acuuuaaaCAUGCUGGCU----UGCCGGGa -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 85315 | 0.71 | 0.973324 |
Target: 5'- uUGAGcga--UugGGCCGAACGGaCCCUg -3' miRNA: 3'- -ACUUuaaacAugCUGGCUUGCC-GGGA- -5' |
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24663 | 3' | -49 | NC_005264.1 | + | 120890 | 0.68 | 0.993558 |
Target: 5'- cGAGAUUUGaccACGcggcggaaaaacuacGCCGAGCGGCUUUc -3' miRNA: 3'- aCUUUAAACa--UGC---------------UGGCUUGCCGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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