miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24663 5' -47.9 NC_005264.1 + 95077 0.66 0.999658
Target:  5'- --uGGGCCuggcgauAAGCGAcgcccugauuUCGCUGAGAGc -3'
miRNA:   3'- gguCCCGGu------UUUGUU----------AGUGACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 41155 0.66 0.999658
Target:  5'- gUCGGGGCCAGAGgAcUCugUagacGAGAc- -3'
miRNA:   3'- -GGUCCCGGUUUUgUuAGugA----CUCUua -5'
24663 5' -47.9 NC_005264.1 + 94534 0.66 0.999658
Target:  5'- -gAGGGCagcGGCGccgCACUGAGAAa -3'
miRNA:   3'- ggUCCCGguuUUGUua-GUGACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 160182 0.66 0.999658
Target:  5'- gUCGGGGCCAGAGgAcUCugUagacGAGAc- -3'
miRNA:   3'- -GGUCCCGGUUUUgUuAGugA----CUCUua -5'
24663 5' -47.9 NC_005264.1 + 24209 0.66 0.999568
Target:  5'- gCCGGuGGCCGAAGCcagCGCgccGGGAu- -3'
miRNA:   3'- -GGUC-CCGGUUUUGuuaGUGa--CUCUua -5'
24663 5' -47.9 NC_005264.1 + 77620 0.66 0.999568
Target:  5'- aCAGGGCuCGGAGuCGAacUCuCUGGGAGg -3'
miRNA:   3'- gGUCCCG-GUUUU-GUU--AGuGACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 93273 0.66 0.999568
Target:  5'- gCCAGGGCCccGGCu-UCAgUGgAGGAa -3'
miRNA:   3'- -GGUCCCGGuuUUGuuAGUgAC-UCUUa -5'
24663 5' -47.9 NC_005264.1 + 25442 0.66 0.999568
Target:  5'- uCCAGGGCCuccucGAACugcuuGUCGCcgacgUGGGGGc -3'
miRNA:   3'- -GGUCCCGGu----UUUGu----UAGUG-----ACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 149259 0.66 0.999568
Target:  5'- gCUGGGGCCGAAGCccuUUGCcagcGAGAGUc -3'
miRNA:   3'- -GGUCCCGGUUUUGuu-AGUGa---CUCUUA- -5'
24663 5' -47.9 NC_005264.1 + 21350 0.66 0.999568
Target:  5'- gCCGGGGCCGGAugAG--GCUGuagccguguucAGGAUa -3'
miRNA:   3'- -GGUCCCGGUUUugUUagUGAC-----------UCUUA- -5'
24663 5' -47.9 NC_005264.1 + 60433 0.66 0.999458
Target:  5'- aCGGGGUauuuuGCGAUCGCguagGAGAu- -3'
miRNA:   3'- gGUCCCGguuu-UGUUAGUGa---CUCUua -5'
24663 5' -47.9 NC_005264.1 + 95182 0.66 0.999458
Target:  5'- aCAGuGUCGAAACcggCGCUGAGGAa -3'
miRNA:   3'- gGUCcCGGUUUUGuuaGUGACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 14579 0.66 0.999325
Target:  5'- -aAGGuGCuCAAGACGGUCuuUGAGAAc -3'
miRNA:   3'- ggUCC-CG-GUUUUGUUAGugACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 141914 0.66 0.999325
Target:  5'- -uGGGGUCAAAcauggucccuGCAAUUACUGGGc-- -3'
miRNA:   3'- ggUCCCGGUUU----------UGUUAGUGACUCuua -5'
24663 5' -47.9 NC_005264.1 + 125614 0.67 0.999165
Target:  5'- cCCAgGGGCCGAcaggucaacGGCGAgCGCgUGGGAAa -3'
miRNA:   3'- -GGU-CCCGGUU---------UUGUUaGUG-ACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 6587 0.67 0.999165
Target:  5'- cCCAgGGGCCGAcaggucaacGGCGAgCGCgUGGGAAa -3'
miRNA:   3'- -GGU-CCCGGUU---------UUGUUaGUG-ACUCUUa -5'
24663 5' -47.9 NC_005264.1 + 54005 0.67 0.999165
Target:  5'- aUAGGGuaaucCCAGAGCAAgagcUCGCUGAGc-- -3'
miRNA:   3'- gGUCCC-----GGUUUUGUU----AGUGACUCuua -5'
24663 5' -47.9 NC_005264.1 + 116372 0.67 0.999165
Target:  5'- gUAGGGCCu--GCcGUCGCggGAGAc- -3'
miRNA:   3'- gGUCCCGGuuuUGuUAGUGa-CUCUua -5'
24663 5' -47.9 NC_005264.1 + 97395 0.67 0.99829
Target:  5'- cCCAGGGCCcGAGCGAUgcgacguguguucggCAgUGAGc-- -3'
miRNA:   3'- -GGUCCCGGuUUUGUUA---------------GUgACUCuua -5'
24663 5' -47.9 NC_005264.1 + 33757 0.67 0.998156
Target:  5'- uCUAGGGCCAGGAuCGAggACUuGGAAa -3'
miRNA:   3'- -GGUCCCGGUUUU-GUUagUGAcUCUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.