miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24668 3' -54.6 NC_005264.1 + 57714 0.66 0.956059
Target:  5'- --aGCGcUUCGUUgGCGCCGaGGUCGu -3'
miRNA:   3'- gcaUGCuAAGUAGgCGCGGUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 41756 0.66 0.956059
Target:  5'- -cUGCGAUUCAUCgGagGUCAcGGCCu -3'
miRNA:   3'- gcAUGCUAAGUAGgCg-CGGUaCCGGc -5'
24668 3' -54.6 NC_005264.1 + 59932 0.66 0.955293
Target:  5'- aCGUACGAUccgagcUCggcgguuaucaugguGUCCGCGCCgcucagccacgcggcGgUGGCCGc -3'
miRNA:   3'- -GCAUGCUA------AG---------------UAGGCGCGG---------------U-ACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 157480 0.66 0.952137
Target:  5'- gGUGUGAaUCAUCCGCGa---GGCCGc -3'
miRNA:   3'- gCAUGCUaAGUAGGCGCgguaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 88738 0.66 0.952137
Target:  5'- --cGCGAcagcgUCGaCCGCGCCAUGuaCGa -3'
miRNA:   3'- gcaUGCUa----AGUaGGCGCGGUACcgGC- -5'
24668 3' -54.6 NC_005264.1 + 17462 0.66 0.952137
Target:  5'- uGUACGGUUUcacaGUaagCGCGUC-UGGCCGu -3'
miRNA:   3'- gCAUGCUAAG----UAg--GCGCGGuACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 93028 0.66 0.952137
Target:  5'- --gGCGGcgUCGUCCGCGCCGaaugcgugcugcUGcGCUGc -3'
miRNA:   3'- gcaUGCUa-AGUAGGCGCGGU------------AC-CGGC- -5'
24668 3' -54.6 NC_005264.1 + 38453 0.66 0.952137
Target:  5'- gGUGUGAaUCAUCCGCGa---GGCCGc -3'
miRNA:   3'- gCAUGCUaAGUAGGCGCgguaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 5035 0.66 0.947987
Target:  5'- --cACGAggu-UCCGCGUCGUGGgCGc -3'
miRNA:   3'- gcaUGCUaaguAGGCGCGGUACCgGC- -5'
24668 3' -54.6 NC_005264.1 + 103081 0.66 0.947987
Target:  5'- --cGCGAagCGUCCGCGUCGcaGCCGc -3'
miRNA:   3'- gcaUGCUaaGUAGGCGCGGUacCGGC- -5'
24668 3' -54.6 NC_005264.1 + 51920 0.66 0.947987
Target:  5'- uGUcucCGG-UCGUCCGCGCCGagcuUGGCg- -3'
miRNA:   3'- gCAu--GCUaAGUAGGCGCGGU----ACCGgc -5'
24668 3' -54.6 NC_005264.1 + 125230 0.66 0.947987
Target:  5'- nGUGCGAgacgCGUCCuuugacccccCGCCGcGGCCGc -3'
miRNA:   3'- gCAUGCUaa--GUAGGc---------GCGGUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 161091 0.66 0.947987
Target:  5'- uGUGCGAUUUuaAUCUGCGaCCAggaucGCCa -3'
miRNA:   3'- gCAUGCUAAG--UAGGCGC-GGUac---CGGc -5'
24668 3' -54.6 NC_005264.1 + 6203 0.66 0.947987
Target:  5'- nGUGCGAgacgCGUCCuuugacccccCGCCGcGGCCGc -3'
miRNA:   3'- gCAUGCUaa--GUAGGc---------GCGGUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 80473 0.67 0.943605
Target:  5'- uGUGCGAagugC-UCCGCuucgccGCCAaGGCCGa -3'
miRNA:   3'- gCAUGCUaa--GuAGGCG------CGGUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 114809 0.67 0.943605
Target:  5'- -aUGCGcAUUgGcCaCGCGCCAUGGUCGu -3'
miRNA:   3'- gcAUGC-UAAgUaG-GCGCGGUACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 110550 0.67 0.93899
Target:  5'- -uUACGGUggaggucgcgCGUaCCGCauuguagauGCCGUGGCCGg -3'
miRNA:   3'- gcAUGCUAa---------GUA-GGCG---------CGGUACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 87273 0.67 0.93899
Target:  5'- uGUACGAUugcgacccuaUCAUCCGCGUuacgggagcguaCGcGGCCc -3'
miRNA:   3'- gCAUGCUA----------AGUAGGCGCG------------GUaCCGGc -5'
24668 3' -54.6 NC_005264.1 + 59240 0.67 0.934138
Target:  5'- -uUAgGAuUUCAgggggCCaCGCCGUGGCCGa -3'
miRNA:   3'- gcAUgCU-AAGUa----GGcGCGGUACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 157191 0.67 0.934138
Target:  5'- gCGUGCGAcuaCcgCCGCGCUGUGGg-- -3'
miRNA:   3'- -GCAUGCUaa-GuaGGCGCGGUACCggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.