miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24672 5' -60.9 NC_005264.1 + 43378 0.66 0.721244
Target:  5'- uAGgUACGAGaCGCUagGGCagAGGGgCGCg -3'
miRNA:   3'- -UCgGUGCUCgGCGA--UCGa-UCCCgGCG- -5'
24672 5' -60.9 NC_005264.1 + 162405 0.66 0.721244
Target:  5'- uAGgUACGAGaCGCUagGGCagAGGGgCGCg -3'
miRNA:   3'- -UCgGUGCUCgGCGA--UCGa-UCCCgGCG- -5'
24672 5' -60.9 NC_005264.1 + 11541 0.66 0.720281
Target:  5'- aAGUCACauggugcgauucaGAGcCCGCgauUGGcCUAGaGGCCGCu -3'
miRNA:   3'- -UCGGUG-------------CUC-GGCG---AUC-GAUC-CCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 130568 0.66 0.720281
Target:  5'- aAGUCACauggugcgauucaGAGcCCGCgauUGGcCUAGaGGCCGCu -3'
miRNA:   3'- -UCGGUG-------------CUC-GGCG---AUC-GAUC-CCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 128655 0.66 0.720281
Target:  5'- uGCCGCG-GCUGCUguccagcAGCUgugacugcAGGG-CGCg -3'
miRNA:   3'- uCGGUGCuCGGCGA-------UCGA--------UCCCgGCG- -5'
24672 5' -60.9 NC_005264.1 + 64145 0.66 0.712553
Target:  5'- cGCCACGGcGCCGCgauccggccgguguGCaAGcGCCGCc -3'
miRNA:   3'- uCGGUGCU-CGGCGau------------CGaUCcCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 75988 0.66 0.711584
Target:  5'- -cCCACacGCCGCUAGCUGGcGCCc- -3'
miRNA:   3'- ucGGUGcuCGGCGAUCGAUCcCGGcg -5'
24672 5' -60.9 NC_005264.1 + 69654 0.66 0.711584
Target:  5'- cGCUuucuagguCGGGCaCGCggcGCUGGGGCCu- -3'
miRNA:   3'- uCGGu-------GCUCG-GCGau-CGAUCCCGGcg -5'
24672 5' -60.9 NC_005264.1 + 119266 0.66 0.711584
Target:  5'- uGCCugGcGCCaC-AGCgaggcGGGCCGCu -3'
miRNA:   3'- uCGGugCuCGGcGaUCGau---CCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 52875 0.66 0.711584
Target:  5'- aGGCuCGCGGuacCUGCcaUAGC-AGGGCCGUa -3'
miRNA:   3'- -UCG-GUGCUc--GGCG--AUCGaUCCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 239 0.66 0.711584
Target:  5'- uGCCugGcGCCaC-AGCgaggcGGGCCGCu -3'
miRNA:   3'- uCGGugCuCGGcGaUCGau---CCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 130312 0.66 0.711584
Target:  5'- cAGCCA-GGGCCGa-GGau-GGGUCGCa -3'
miRNA:   3'- -UCGGUgCUCGGCgaUCgauCCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 11347 0.66 0.710615
Target:  5'- cGCCACGAGUugCGCUAuccugucguucuuGCggaagaacGcGGCCGCg -3'
miRNA:   3'- uCGGUGCUCG--GCGAU-------------CGau------C-CCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 135575 0.66 0.702836
Target:  5'- gGGCCAacaGGGCCucuucCUGGCUAcuagagagcgcagaaGGCCGCg -3'
miRNA:   3'- -UCGGUg--CUCGGc----GAUCGAUc--------------CCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 6888 0.66 0.702836
Target:  5'- cGuCCGCGAGCCGCgcagucccagcgcgcGGCUuuccguGGG-CGCg -3'
miRNA:   3'- uC-GGUGCUCGGCGa--------------UCGAu-----CCCgGCG- -5'
24672 5' -60.9 NC_005264.1 + 66240 0.66 0.701861
Target:  5'- gAGCUGCGGGCCuaGCaucucuGCcAGGGCCa- -3'
miRNA:   3'- -UCGGUGCUCGG--CGau----CGaUCCCGGcg -5'
24672 5' -60.9 NC_005264.1 + 40656 0.66 0.701861
Target:  5'- uGGCUgcGCGAGCCuuaCUAcGCUGGcGCCGUu -3'
miRNA:   3'- -UCGG--UGCUCGGc--GAU-CGAUCcCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 149477 0.66 0.701861
Target:  5'- gAGCCGCGGGCC-CcGGCUc-GGCCcCg -3'
miRNA:   3'- -UCGGUGCUCGGcGaUCGAucCCGGcG- -5'
24672 5' -60.9 NC_005264.1 + 30450 0.66 0.701861
Target:  5'- gAGCCGCGGGCC-CcGGCUc-GGCCcCg -3'
miRNA:   3'- -UCGGUGCUCGGcGaUCGAucCCGGcG- -5'
24672 5' -60.9 NC_005264.1 + 116283 0.66 0.701861
Target:  5'- aAGCCguggcGCGGGCgGCUacGGCUGuGGCCu- -3'
miRNA:   3'- -UCGG-----UGCUCGgCGA--UCGAUcCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.