Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 52961 | 0.66 | 0.76288 |
Target: 5'- ---uGCGCCGCGggguaUUCCGCUCUGUCc -3' miRNA: 3'- cacuCGCGGUGCga---AGGGUGGGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 98032 | 0.66 | 0.78135 |
Target: 5'- cGUGAGCcCUGCGCUUCCgguGCCCaUGg- -3' miRNA: 3'- -CACUCGcGGUGCGAAGGg--UGGG-ACag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 68024 | 0.66 | 0.789497 |
Target: 5'- -gGAGCGCCAaagagcggauaacCGCUUCCgUGCCCg--- -3' miRNA: 3'- caCUCGCGGU-------------GCGAAGG-GUGGGacag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 114748 | 0.66 | 0.790395 |
Target: 5'- cGUGAaaGCGCaGCGCgUUCUUGCCCUG-Cg -3' miRNA: 3'- -CACU--CGCGgUGCG-AAGGGUGGGACaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 4234 | 0.65 | 0.795756 |
Target: 5'- --cGGCGCCACGCgaagguagaucagUCCCGgCUUGcCg -3' miRNA: 3'- cacUCGCGGUGCGa------------AGGGUgGGACaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 123261 | 0.65 | 0.795756 |
Target: 5'- --cGGCGCCACGCgaagguagaucagUCCCGgCUUGcCg -3' miRNA: 3'- cacUCGCGGUGCGa------------AGGGUgGGACaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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