miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 30432 0.66 0.995307
Target:  5'- gCGGagGAGGucuCGGggGAgcCGCG-GGCCCc -3'
miRNA:   3'- -GCCa-CUCCu--GUCuuUU--GUGCuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 13343 0.66 0.996573
Target:  5'- gGGgcgcGAGGAUgaacgucgGGGccGAGC-CGggGCCCg -3'
miRNA:   3'- gCCa---CUCCUG--------UCU--UUUGuGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 92555 0.66 0.996573
Target:  5'- gGaGUGGGGgaaguuGCGGGAcucGAC-CGAGGCCUg -3'
miRNA:   3'- gC-CACUCC------UGUCUU---UUGuGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 91744 0.66 0.995307
Target:  5'- aGGgccGAGGGCGGcuguuGACAaauagauacaaGggGCCCa -3'
miRNA:   3'- gCCa--CUCCUGUCuu---UUGUg----------CuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 13297 0.66 0.995087
Target:  5'- gGGUcguggagcuccccgGAGGACGGcc-GCGCGGAGCa- -3'
miRNA:   3'- gCCA--------------CUCCUGUCuuuUGUGCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 77768 0.66 0.997092
Target:  5'- aCGGUGcggcGGACcuGGGGAACGgGGcaGGCCUu -3'
miRNA:   3'- -GCCACu---CCUG--UCUUUUGUgCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 30895 0.66 0.994543
Target:  5'- ---cGGGGACgcgucgggGGAGGACuGCGAGGCCg -3'
miRNA:   3'- gccaCUCCUG--------UCUUUUG-UGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 43516 0.66 0.994543
Target:  5'- aGGUGGGaGACcgAGGAAggGCuCGGGuGCCCa -3'
miRNA:   3'- gCCACUC-CUG--UCUUU--UGuGCUU-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 25665 0.66 0.994543
Target:  5'- uCGGcacgucUGGGGGCAGcagaagggacGGGACGCGcauGCCCc -3'
miRNA:   3'- -GCC------ACUCCUGUC----------UUUUGUGCuu-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 22542 0.66 0.995981
Target:  5'- gGGcGGGGAaagauaCAGAAAcCGCGAguAGCCUc -3'
miRNA:   3'- gCCaCUCCU------GUCUUUuGUGCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 74338 0.66 0.997544
Target:  5'- uCGGUGAucuCAGAGGcgAUGAAGUCCg -3'
miRNA:   3'- -GCCACUccuGUCUUUugUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 150801 0.66 0.996573
Target:  5'- gCGuGUG-GGGCAGGAGcGCAgCGAcuGCCCc -3'
miRNA:   3'- -GC-CACuCCUGUCUUU-UGU-GCUu-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 25097 0.67 0.990432
Target:  5'- cCGGggacaagcGGGGCAGAcuuAGCgcgGCGAAGUCCg -3'
miRNA:   3'- -GCCac------UCCUGUCUu--UUG---UGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 135595 0.67 0.990432
Target:  5'- gGGUGggucGGGACGGuAAcCACGAAcucGCCUg -3'
miRNA:   3'- gCCAC----UCCUGUCuUUuGUGCUU---CGGG- -5'
24675 5' -50.6 NC_005264.1 + 28960 0.67 0.991635
Target:  5'- gGGUGAacgccaaGACucuGAGCGCGGAGCCg -3'
miRNA:   3'- gCCACUc------CUGucuUUUGUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 37792 0.67 0.991635
Target:  5'- aGGcGAGcGGCGGAGAagagGCGCGccGCCg -3'
miRNA:   3'- gCCaCUC-CUGUCUUU----UGUGCuuCGGg -5'
24675 5' -50.6 NC_005264.1 + 25373 0.67 0.989096
Target:  5'- uGGUcgagGAGGGCGGcuAGCACGGuuuccgucaggAGCaCCg -3'
miRNA:   3'- gCCA----CUCCUGUCuuUUGUGCU-----------UCG-GG- -5'
24675 5' -50.6 NC_005264.1 + 57385 0.67 0.988955
Target:  5'- uCGGUGGGGcGCAGccGAuuCGCGAugcggacgucaaaAGUCCa -3'
miRNA:   3'- -GCCACUCC-UGUC--UUuuGUGCU-------------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 80626 0.67 0.989096
Target:  5'- uGGgccccGAGGACGauGGACGCGcGGCCa -3'
miRNA:   3'- gCCa----CUCCUGUcuUUUGUGCuUCGGg -5'
24675 5' -50.6 NC_005264.1 + 75028 0.67 0.992716
Target:  5'- cCGuGUuGGGGCuaucGAuuguCGCGAAGCCCg -3'
miRNA:   3'- -GC-CAcUCCUGu---CUuuu-GUGCUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.