Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24675 | 5' | -50.6 | NC_005264.1 | + | 74338 | 0.66 | 0.997544 |
Target: 5'- uCGGUGAucuCAGAGGcgAUGAAGUCCg -3' miRNA: 3'- -GCCACUccuGUCUUUugUGCUUCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 25665 | 0.66 | 0.994543 |
Target: 5'- uCGGcacgucUGGGGGCAGcagaagggacGGGACGCGcauGCCCc -3' miRNA: 3'- -GCC------ACUCCUGUC----------UUUUGUGCuu-CGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 105342 | 0.66 | 0.994543 |
Target: 5'- aGGUGuucaccGGGCGGcugcuGCACGAGGUgCg -3' miRNA: 3'- gCCACu-----CCUGUCuuu--UGUGCUUCGgG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 147229 | 0.66 | 0.997544 |
Target: 5'- aGGUGGGcACgAGAGAuauGC-CGGAGCCg -3' miRNA: 3'- gCCACUCcUG-UCUUU---UGuGCUUCGGg -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 49624 | 0.66 | 0.994543 |
Target: 5'- uCGGUGGGGuacCAGggGGCcaaGguGCUCg -3' miRNA: 3'- -GCCACUCCu--GUCuuUUGug-CuuCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 162543 | 0.66 | 0.994543 |
Target: 5'- aGGUGGGaGACcgAGGAAggGCuCGGGuGCCCa -3' miRNA: 3'- gCCACUC-CUG--UCUUU--UGuGCUU-CGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 149921 | 0.66 | 0.994543 |
Target: 5'- ---cGGGGACgcgucgggGGAGGACuGCGAGGCCg -3' miRNA: 3'- gccaCUCCUG--------UCUUUUG-UGCUUCGGg -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 132324 | 0.66 | 0.995087 |
Target: 5'- gGGUcguggagcuccccgGAGGACGGcc-GCGCGGAGCa- -3' miRNA: 3'- gCCA--------------CUCCUGUCuuuUGUGCUUCGgg -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 33892 | 0.66 | 0.995234 |
Target: 5'- gCGGcgGuGGAacuccUAGAAGACAUGGcggagcgAGCCCa -3' miRNA: 3'- -GCCa-CuCCU-----GUCUUUUGUGCU-------UCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 43516 | 0.66 | 0.994543 |
Target: 5'- aGGUGGGaGACcgAGGAAggGCuCGGGuGCCCa -3' miRNA: 3'- gCCACUC-CUG--UCUUU--UGuGCUU-CGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 30895 | 0.66 | 0.994543 |
Target: 5'- ---cGGGGACgcgucgggGGAGGACuGCGAGGCCg -3' miRNA: 3'- gccaCUCCUG--------UCUUUUG-UGCUUCGGg -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 13297 | 0.66 | 0.995087 |
Target: 5'- gGGUcguggagcuccccgGAGGACGGcc-GCGCGGAGCa- -3' miRNA: 3'- gCCA--------------CUCCUGUCuuuUGUGCUUCGgg -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 77768 | 0.66 | 0.997092 |
Target: 5'- aCGGUGcggcGGACcuGGGGAACGgGGcaGGCCUu -3' miRNA: 3'- -GCCACu---CCUG--UCUUUUGUgCU--UCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 92555 | 0.66 | 0.996573 |
Target: 5'- gGaGUGGGGgaaguuGCGGGAcucGAC-CGAGGCCUg -3' miRNA: 3'- gC-CACUCC------UGUCUU---UUGuGCUUCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 13343 | 0.66 | 0.996573 |
Target: 5'- gGGgcgcGAGGAUgaacgucgGGGccGAGC-CGggGCCCg -3' miRNA: 3'- gCCa---CUCCUG--------UCU--UUUGuGCuuCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 150801 | 0.66 | 0.996573 |
Target: 5'- gCGuGUG-GGGCAGGAGcGCAgCGAcuGCCCc -3' miRNA: 3'- -GC-CACuCCUGUCUUU-UGU-GCUu-CGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 44911 | 0.66 | 0.995307 |
Target: 5'- gCGG-GAGGAgAGAuccggcgcaagcGAAcCGCG-GGCCCg -3' miRNA: 3'- -GCCaCUCCUgUCU------------UUU-GUGCuUCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 40969 | 0.66 | 0.995307 |
Target: 5'- ---cGGGcGACGGcgcGAGCGCGAccGGCCCu -3' miRNA: 3'- gccaCUC-CUGUCu--UUUGUGCU--UCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 30432 | 0.66 | 0.995307 |
Target: 5'- gCGGagGAGGucuCGGggGAgcCGCG-GGCCCc -3' miRNA: 3'- -GCCa-CUCCu--GUCuuUU--GUGCuUCGGG- -5' |
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24675 | 5' | -50.6 | NC_005264.1 | + | 91744 | 0.66 | 0.995307 |
Target: 5'- aGGgccGAGGGCGGcuguuGACAaauagauacaaGggGCCCa -3' miRNA: 3'- gCCa--CUCCUGUCuu---UUGUg----------CuuCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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