miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 108159 1.14 0.005393
Target:  5'- cCGGUGAGGACAGAAAACACGAAGCCCa -3'
miRNA:   3'- -GCCACUCCUGUCUUUUGUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 43974 0.76 0.724426
Target:  5'- aCGGUgauGAGGACGcAGAACGCGAGGCg- -3'
miRNA:   3'- -GCCA---CUCCUGUcUUUUGUGCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 109624 0.76 0.75143
Target:  5'- uGGcGuGGGCGGggGGCGCGAcgguugcaacucgcGGCCCc -3'
miRNA:   3'- gCCaCuCCUGUCuuUUGUGCU--------------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 18523 0.75 0.764157
Target:  5'- uGGUGGGGGuccuCAGu-GAUACGAAGCCg -3'
miRNA:   3'- gCCACUCCU----GUCuuUUGUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 162406 0.75 0.783324
Target:  5'- aGGUacgagacgcuAGGGCAGAgGGGCGCGAAGCCUa -3'
miRNA:   3'- gCCAc---------UCCUGUCU-UUUGUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 43379 0.75 0.783324
Target:  5'- aGGUacgagacgcuAGGGCAGAgGGGCGCGAAGCCUa -3'
miRNA:   3'- gCCAc---------UCCUGUCU-UUUGUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 37473 0.75 0.801006
Target:  5'- gCGG-GAGGAagaGGAGGACGaugagucugcuccCGAAGCCCc -3'
miRNA:   3'- -GCCaCUCCUg--UCUUUUGU-------------GCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 154799 0.75 0.801921
Target:  5'- gGGUGaAGaGGCGGAGGGCGCGGuGGCgCCg -3'
miRNA:   3'- gCCAC-UC-CUGUCUUUUGUGCU-UCG-GG- -5'
24675 5' -50.6 NC_005264.1 + 35773 0.75 0.801921
Target:  5'- gGGUGaAGaGGCGGAGGGCGCGGuGGCgCCg -3'
miRNA:   3'- gCCAC-UC-CUGUCUUUUGUGCU-UCG-GG- -5'
24675 5' -50.6 NC_005264.1 + 28020 0.74 0.845436
Target:  5'- uCGGUcGGGGGCGGGAGgucuuccggcgcGCGCGAcGCCg -3'
miRNA:   3'- -GCCA-CUCCUGUCUUU------------UGUGCUuCGGg -5'
24675 5' -50.6 NC_005264.1 + 37106 0.73 0.853561
Target:  5'- aGGUGGuGGGCAGGacGAGgGCGAGGCggCCg -3'
miRNA:   3'- gCCACU-CCUGUCU--UUUgUGCUUCG--GG- -5'
24675 5' -50.6 NC_005264.1 + 16647 0.73 0.853561
Target:  5'- gGGUGgAGGACGGuaguacCAUGAGGCCa -3'
miRNA:   3'- gCCAC-UCCUGUCuuuu--GUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 156133 0.73 0.853561
Target:  5'- aGGUGGuGGGCAGGacGAGgGCGAGGCggCCg -3'
miRNA:   3'- gCCACU-CCUGUCU--UUUgUGCUUCG--GG- -5'
24675 5' -50.6 NC_005264.1 + 89291 0.73 0.869172
Target:  5'- uGGUGAGcaGAUGGgcGACACGugauGCCCg -3'
miRNA:   3'- gCCACUC--CUGUCuuUUGUGCuu--CGGG- -5'
24675 5' -50.6 NC_005264.1 + 55544 0.73 0.883889
Target:  5'- uGGUGGcGACGGAAGuACugGAggggggagcgcGGCCCa -3'
miRNA:   3'- gCCACUcCUGUCUUU-UGugCU-----------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 105064 0.72 0.89767
Target:  5'- ---cGAGGAgcUAGAcGACGCGAAGCCg -3'
miRNA:   3'- gccaCUCCU--GUCUuUUGUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 91562 0.72 0.89767
Target:  5'- gCGGcgGGGGGCAcGAGGcuuguCGCGGAGCUCa -3'
miRNA:   3'- -GCCa-CUCCUGU-CUUUu----GUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 155506 0.72 0.904198
Target:  5'- aGGcgGAGGAC-GAAGACGCGGgaucucccgcGGCUCg -3'
miRNA:   3'- gCCa-CUCCUGuCUUUUGUGCU----------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 36479 0.72 0.904198
Target:  5'- aGGcgGAGGAC-GAAGACGCGGgaucucccgcGGCUCg -3'
miRNA:   3'- gCCa-CUCCUGuCUUUUGUGCU----------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 41242 0.72 0.904198
Target:  5'- gCGGgcgGAGGACucuGAAGACuCGGAGuacCCCg -3'
miRNA:   3'- -GCCa--CUCCUGu--CUUUUGuGCUUC---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.