miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 108159 1.14 0.005393
Target:  5'- cCGGUGAGGACAGAAAACACGAAGCCCa -3'
miRNA:   3'- -GCCACUCCUGUCUUUUGUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 150573 0.69 0.966551
Target:  5'- gGGUGGGGGCGGAcgGcCAUucccgacgugGAGGCgCCa -3'
miRNA:   3'- gCCACUCCUGUCUuuU-GUG----------CUUCG-GG- -5'
24675 5' -50.6 NC_005264.1 + 119974 0.69 0.969682
Target:  5'- uCGG-GGGGGCucGAGGACuuagAgGAAGCCCc -3'
miRNA:   3'- -GCCaCUCCUGu-CUUUUG----UgCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 147229 0.66 0.997544
Target:  5'- aGGUGGGcACgAGAGAuauGC-CGGAGCCg -3'
miRNA:   3'- gCCACUCcUG-UCUUU---UGuGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 28020 0.74 0.845436
Target:  5'- uCGGUcGGGGGCGGGAGgucuuccggcgcGCGCGAcGCCg -3'
miRNA:   3'- -GCCA-CUCCUGUCUUU------------UGUGCUuCGGg -5'
24675 5' -50.6 NC_005264.1 + 156133 0.73 0.853561
Target:  5'- aGGUGGuGGGCAGGacGAGgGCGAGGCggCCg -3'
miRNA:   3'- gCCACU-CCUGUCU--UUUgUGCUUCG--GG- -5'
24675 5' -50.6 NC_005264.1 + 105064 0.72 0.89767
Target:  5'- ---cGAGGAgcUAGAcGACGCGAAGCCg -3'
miRNA:   3'- gccaCUCCU--GUCUuUUGUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 155506 0.72 0.904198
Target:  5'- aGGcgGAGGAC-GAAGACGCGGgaucucccgcGGCUCg -3'
miRNA:   3'- gCCa-CUCCUGuCUUUUGUGCU----------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 101717 0.72 0.916516
Target:  5'- cCGGU-AGGACAGcaucAGCACGAAcacuugccacGCCCa -3'
miRNA:   3'- -GCCAcUCCUGUCuu--UUGUGCUU----------CGGG- -5'
24675 5' -50.6 NC_005264.1 + 121926 0.7 0.95962
Target:  5'- gCGGgGAGGGCGacggcGAGAGCgACGGAGUCg -3'
miRNA:   3'- -GCCaCUCCUGU-----CUUUUG-UGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 136229 0.71 0.937658
Target:  5'- aCGG-GAGGGCcGAGGugGCGAcggacacGGCUCa -3'
miRNA:   3'- -GCCaCUCCUGuCUUUugUGCU-------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 76671 0.72 0.904198
Target:  5'- cCGGUGcGG-CAGAAGAUACcucuGCCCa -3'
miRNA:   3'- -GCCACuCCuGUCUUUUGUGcuu-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 162406 0.75 0.783324
Target:  5'- aGGUacgagacgcuAGGGCAGAgGGGCGCGAAGCCUa -3'
miRNA:   3'- gCCAc---------UCCUGUCU-UUUGUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 29556 0.71 0.942933
Target:  5'- aCGGcgGAGG-CAGAGAuCACGuuGCCg -3'
miRNA:   3'- -GCCa-CUCCuGUCUUUuGUGCuuCGGg -5'
24675 5' -50.6 NC_005264.1 + 37473 0.75 0.801006
Target:  5'- gCGG-GAGGAagaGGAGGACGaugagucugcuccCGAAGCCCc -3'
miRNA:   3'- -GCCaCUCCUg--UCUUUUGU-------------GCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 160269 0.72 0.904198
Target:  5'- gCGGgcgGAGGACucuGAAGACuCGGAGuacCCCg -3'
miRNA:   3'- -GCCa--CUCCUGu--CUUUUGuGCUUC---GGG- -5'
24675 5' -50.6 NC_005264.1 + 75503 0.7 0.951759
Target:  5'- gGcGUGAGGuCAGuGAugACGucgcAGCCCa -3'
miRNA:   3'- gC-CACUCCuGUCuUUugUGCu---UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 68482 0.69 0.966551
Target:  5'- uCGGUGAGGuuUAGAucGAACGCGGcgacGGCUUu -3'
miRNA:   3'- -GCCACUCCu-GUCU--UUUGUGCU----UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 154799 0.75 0.801921
Target:  5'- gGGUGaAGaGGCGGAGGGCGCGGuGGCgCCg -3'
miRNA:   3'- gCCAC-UC-CUGUCUUUUGUGCU-UCG-GG- -5'
24675 5' -50.6 NC_005264.1 + 55544 0.73 0.883889
Target:  5'- uGGUGGcGACGGAAGuACugGAggggggagcgcGGCCCa -3'
miRNA:   3'- gCCACUcCUGUCUUU-UGugCU-----------UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.