miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 948 0.69 0.969682
Target:  5'- uCGG-GGGGGCucGAGGACuuagAgGAAGCCCc -3'
miRNA:   3'- -GCCaCUCCUGu-CUUUUG----UgCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 1012 0.67 0.989096
Target:  5'- -cGUGuGGugGGggGGCA-GggGCCg -3'
miRNA:   3'- gcCACuCCugUCuuUUGUgCuuCGGg -5'
24675 5' -50.6 NC_005264.1 + 2900 0.7 0.95962
Target:  5'- gCGGgGAGGGCGacggcGAGAGCgACGGAGUCg -3'
miRNA:   3'- -GCCaCUCCUGU-----CUUUUG-UGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 3381 0.69 0.972597
Target:  5'- gCGGcGAGGGCuucuccGGAACGCGggGUCg -3'
miRNA:   3'- -GCCaCUCCUGuc----UUUUGUGCuuCGGg -5'
24675 5' -50.6 NC_005264.1 + 3498 0.69 0.969682
Target:  5'- gCGGcgGGGGGCAGggGAUccuCGccGUCCg -3'
miRNA:   3'- -GCCa-CUCCUGUCuuUUGu--GCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 3636 0.67 0.993683
Target:  5'- gGGUGGGGguuucugggagGCGGuuuGAGCugGggGCg- -3'
miRNA:   3'- gCCACUCC-----------UGUCu--UUUGugCuuCGgg -5'
24675 5' -50.6 NC_005264.1 + 6133 0.67 0.990432
Target:  5'- gCGG-GAGGGC-GAGGGcCGCGc-GCCCg -3'
miRNA:   3'- -GCCaCUCCUGuCUUUU-GUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 7266 0.69 0.975304
Target:  5'- uCGGcGccAGGAC-GAAGACgGCGggGCCUa -3'
miRNA:   3'- -GCCaC--UCCUGuCUUUUG-UGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 8208 0.69 0.975304
Target:  5'- ---cGGGGACAcGGAGACGCGGccaucGGCCg -3'
miRNA:   3'- gccaCUCCUGU-CUUUUGUGCU-----UCGGg -5'
24675 5' -50.6 NC_005264.1 + 9560 0.66 0.997092
Target:  5'- cCGGUGGcGGcuaGCAGGuaaaACGucGCCCg -3'
miRNA:   3'- -GCCACU-CC---UGUCUuuugUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 9647 0.69 0.972597
Target:  5'- uGGgGGGGGCAGugcAGAUcgucuaGCGAGGCCUu -3'
miRNA:   3'- gCCaCUCCUGUCu--UUUG------UGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 13297 0.66 0.995087
Target:  5'- gGGUcguggagcuccccgGAGGACGGcc-GCGCGGAGCa- -3'
miRNA:   3'- gCCA--------------CUCCUGUCuuuUGUGCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 13343 0.66 0.996573
Target:  5'- gGGgcgcGAGGAUgaacgucgGGGccGAGC-CGggGCCCg -3'
miRNA:   3'- gCCa---CUCCUG--------UCU--UUUGuGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 13798 0.66 0.997092
Target:  5'- aCGGUGAacccGGGCAGggGGCugugggacgugGCGucuaacauAGCCa -3'
miRNA:   3'- -GCCACU----CCUGUCuuUUG-----------UGCu-------UCGGg -5'
24675 5' -50.6 NC_005264.1 + 16647 0.73 0.853561
Target:  5'- gGGUGgAGGACGGuaguacCAUGAGGCCa -3'
miRNA:   3'- gCCAC-UCCUGUCuuuu--GUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 18182 0.7 0.963199
Target:  5'- -cGUGGGGGC-GAAAACACu-AGUCCa -3'
miRNA:   3'- gcCACUCCUGuCUUUUGUGcuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 18523 0.75 0.764157
Target:  5'- uGGUGGGGGuccuCAGu-GAUACGAAGCCg -3'
miRNA:   3'- gCCACUCCU----GUCuuUUGUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 20245 0.67 0.992716
Target:  5'- aCGG-GuGGGCAGggGuuGCGGcgcGGCCUc -3'
miRNA:   3'- -GCCaCuCCUGUCuuUugUGCU---UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 22542 0.66 0.995981
Target:  5'- gGGcGGGGAaagauaCAGAAAcCGCGAguAGCCUc -3'
miRNA:   3'- gCCaCUCCU------GUCUUUuGUGCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 25097 0.67 0.990432
Target:  5'- cCGGggacaagcGGGGCAGAcuuAGCgcgGCGAAGUCCg -3'
miRNA:   3'- -GCCac------UCCUGUCUu--UUG---UGCUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.