miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 84909 0.67 0.991635
Target:  5'- aCGG-GAGGGCGGGAAGaGCcAGGCgCg -3'
miRNA:   3'- -GCCaCUCCUGUCUUUUgUGcUUCGgG- -5'
24675 5' -50.6 NC_005264.1 + 28960 0.67 0.991635
Target:  5'- gGGUGAacgccaaGACucuGAGCGCGGAGCCg -3'
miRNA:   3'- gCCACUc------CUGucuUUUGUGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 134865 0.67 0.991288
Target:  5'- uCGGUcaGAuaccacGGGCgcgcaccguuguuuGGAAGACGCGgcGCCCg -3'
miRNA:   3'- -GCCA--CU------CCUG--------------UCUUUUGUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 125160 0.67 0.990432
Target:  5'- gCGG-GAGGGC-GAGGGcCGCGc-GCCCg -3'
miRNA:   3'- -GCCaCUCCUGuCUUUU-GUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 25097 0.67 0.990432
Target:  5'- cCGGggacaagcGGGGCAGAcuuAGCgcgGCGAAGUCCg -3'
miRNA:   3'- -GCCac------UCCUGUCUu--UUG---UGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 135595 0.67 0.990432
Target:  5'- gGGUGggucGGGACGGuAAcCACGAAcucGCCUg -3'
miRNA:   3'- gCCAC----UCCUGUCuUUuGUGCUU---CGGG- -5'
24675 5' -50.6 NC_005264.1 + 153354 0.67 0.990432
Target:  5'- aCGGggGAGGcgGCAGAcaagacGCGCGAAGCg- -3'
miRNA:   3'- -GCCa-CUCC--UGUCUuu----UGUGCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 6133 0.67 0.990432
Target:  5'- gCGG-GAGGGC-GAGGGcCGCGc-GCCCg -3'
miRNA:   3'- -GCCaCUCCUGuCUUUU-GUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 1012 0.67 0.989096
Target:  5'- -cGUGuGGugGGggGGCA-GggGCCg -3'
miRNA:   3'- gcCACuCCugUCuuUUGUgCuuCGGg -5'
24675 5' -50.6 NC_005264.1 + 25373 0.67 0.989096
Target:  5'- uGGUcgagGAGGGCGGcuAGCACGGuuuccgucaggAGCaCCg -3'
miRNA:   3'- gCCA----CUCCUGUCuuUUGUGCU-----------UCG-GG- -5'
24675 5' -50.6 NC_005264.1 + 80626 0.67 0.989096
Target:  5'- uGGgccccGAGGACGauGGACGCGcGGCCa -3'
miRNA:   3'- gCCa----CUCCUGUcuUUUGUGCuUCGGg -5'
24675 5' -50.6 NC_005264.1 + 30583 0.67 0.989096
Target:  5'- aGGaGAGGACAcgcacaacGAGAACACGuuuuuCCCg -3'
miRNA:   3'- gCCaCUCCUGU--------CUUUUGUGCuuc--GGG- -5'
24675 5' -50.6 NC_005264.1 + 57385 0.67 0.988955
Target:  5'- uCGGUGGGGcGCAGccGAuuCGCGAugcggacgucaaaAGUCCa -3'
miRNA:   3'- -GCCACUCC-UGUC--UUuuGUGCU-------------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 63158 0.68 0.987619
Target:  5'- aCGGcGAGGGCAuGAAcccugcCGCGuGGGCCCc -3'
miRNA:   3'- -GCCaCUCCUGU-CUUuu----GUGC-UUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 102098 0.68 0.987463
Target:  5'- aGGacgagucUGAGGACGGcuGGCggcgguACGAGGCCg -3'
miRNA:   3'- gCC-------ACUCCUGUCuuUUG------UGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 67356 0.68 0.985993
Target:  5'- ---aGAGGGCGGAAAACGuagcGCCCg -3'
miRNA:   3'- gccaCUCCUGUCUUUUGUgcuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 120486 0.68 0.984207
Target:  5'- uCGGUGcgcGGAgUAGguGGCggggGCGAGGCCCu -3'
miRNA:   3'- -GCCACu--CCU-GUCuuUUG----UGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 44144 0.68 0.984207
Target:  5'- gCGG-GAGGGCAGGuaagccGCGCG-AGCgCg -3'
miRNA:   3'- -GCCaCUCCUGUCUuu----UGUGCuUCGgG- -5'
24675 5' -50.6 NC_005264.1 + 43211 0.68 0.982254
Target:  5'- gCGG-GGGGGgGGggGGCuacgGCGggGCUg -3'
miRNA:   3'- -GCCaCUCCUgUCuuUUG----UGCuuCGGg -5'
24675 5' -50.6 NC_005264.1 + 162238 0.68 0.982254
Target:  5'- gCGG-GGGGGgGGggGGCuacgGCGggGCUg -3'
miRNA:   3'- -GCCaCUCCUgUCuuUUG----UGCuuCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.