miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 3' -53.5 NC_005264.1 + 46373 0.66 0.978572
Target:  5'- uGG--CGCGCAGGAcaccgauacGCGGgucgUCagGGCc -3'
miRNA:   3'- gCCaaGCGCGUCCU---------UGCCa---AGaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 22324 0.66 0.973595
Target:  5'- uGG--CGCGCGGGGcaAUGGgUCUgGGCu -3'
miRNA:   3'- gCCaaGCGCGUCCU--UGCCaAGAaCCG- -5'
24676 3' -53.5 NC_005264.1 + 34496 0.66 0.973595
Target:  5'- -cGUUCG-GCGGGAAUGGgg---GGCg -3'
miRNA:   3'- gcCAAGCgCGUCCUUGCCaagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 33798 0.66 0.970814
Target:  5'- gGGUUCcgaacgGCGCGGGcuACGGggcucgUCgagGGCu -3'
miRNA:   3'- gCCAAG------CGCGUCCu-UGCCa-----AGaa-CCG- -5'
24676 3' -53.5 NC_005264.1 + 74611 0.66 0.970814
Target:  5'- uGGUcUGCGUAGaAGCGa-UCUUGGCg -3'
miRNA:   3'- gCCAaGCGCGUCcUUGCcaAGAACCG- -5'
24676 3' -53.5 NC_005264.1 + 152824 0.66 0.970814
Target:  5'- gGGUUCcgaacgGCGCGGGcuACGGggcucgUCgagGGCu -3'
miRNA:   3'- gCCAAG------CGCGUCCu-UGCCa-----AGaa-CCG- -5'
24676 3' -53.5 NC_005264.1 + 77329 0.66 0.970814
Target:  5'- uGGUucauugcccUCGCGCGGGAGaaGU---UGGCg -3'
miRNA:   3'- gCCA---------AGCGCGUCCUUgcCAagaACCG- -5'
24676 3' -53.5 NC_005264.1 + 95203 0.67 0.964303
Target:  5'- aCGGgcCGCGCAGGAcaccccuGCGcccgCgUGGCg -3'
miRNA:   3'- -GCCaaGCGCGUCCU-------UGCcaa-GaACCG- -5'
24676 3' -53.5 NC_005264.1 + 45170 0.67 0.961223
Target:  5'- aGGagagCGCgGCAGcGAACGGU-CU-GGCa -3'
miRNA:   3'- gCCaa--GCG-CGUC-CUUGCCAaGAaCCG- -5'
24676 3' -53.5 NC_005264.1 + 3617 0.67 0.953733
Target:  5'- aCGGUgggCGCuguggGCGGGGugGGgguUUCUgggaGGCg -3'
miRNA:   3'- -GCCAa--GCG-----CGUCCUugCC---AAGAa---CCG- -5'
24676 3' -53.5 NC_005264.1 + 5534 0.67 0.953733
Target:  5'- gCGGcgucUCGCGC-GGAGCGGguuucUCUUcGCa -3'
miRNA:   3'- -GCCa---AGCGCGuCCUUGCCa----AGAAcCG- -5'
24676 3' -53.5 NC_005264.1 + 57567 0.67 0.953733
Target:  5'- aGGUUUuCGCA-GAGCGGUUUcaUGGCc -3'
miRNA:   3'- gCCAAGcGCGUcCUUGCCAAGa-ACCG- -5'
24676 3' -53.5 NC_005264.1 + 93113 0.67 0.953733
Target:  5'- uCGGUgccCGCGCucccGCGGUUCacgaUGGCg -3'
miRNA:   3'- -GCCAa--GCGCGuccuUGCCAAGa---ACCG- -5'
24676 3' -53.5 NC_005264.1 + 13278 0.67 0.949645
Target:  5'- gGGUUCGCGcCAGcGAGgCGGgUCgUGGa -3'
miRNA:   3'- gCCAAGCGC-GUC-CUU-GCCaAGaACCg -5'
24676 3' -53.5 NC_005264.1 + 132305 0.67 0.949645
Target:  5'- gGGUUCGCGcCAGcGAGgCGGgUCgUGGa -3'
miRNA:   3'- gCCAAGCGC-GUC-CUU-GCCaAGaACCg -5'
24676 3' -53.5 NC_005264.1 + 13563 0.68 0.945323
Target:  5'- gCGGcgCGgGCGGGAcCGGggaagGGCg -3'
miRNA:   3'- -GCCaaGCgCGUCCUuGCCaagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 132590 0.68 0.945323
Target:  5'- gCGGcgCGgGCGGGAcCGGggaagGGCg -3'
miRNA:   3'- -GCCaaGCgCGUCCUuGCCaagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 94803 0.68 0.935968
Target:  5'- ---gUCGgGCAGGaAGCGGUUauccgcucUUUGGCg -3'
miRNA:   3'- gccaAGCgCGUCC-UUGCCAA--------GAACCG- -5'
24676 3' -53.5 NC_005264.1 + 120721 0.68 0.925653
Target:  5'- gCGG-UCGgGCGGaGGACGGUgcc-GGCg -3'
miRNA:   3'- -GCCaAGCgCGUC-CUUGCCAagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 5015 0.68 0.920134
Target:  5'- gCGGUUUGCGCAGaGGAggccacgaGGUUCcgcgucgugGGCg -3'
miRNA:   3'- -GCCAAGCGCGUC-CUUg-------CCAAGaa-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.