miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 39107 0.66 0.95483
Target:  5'- ---cCGUGCACGCcuacguGUUGCuGCGCuUCGg -3'
miRNA:   3'- cuuaGCGCGUGCG------CAACG-CGUGcAGC- -5'
24676 5' -54.9 NC_005264.1 + 42056 0.68 0.891313
Target:  5'- cAAUCGCGUugccCGCGgcGCGUGgCGUCa -3'
miRNA:   3'- cUUAGCGCGu---GCGCaaCGCGU-GCAGc -5'
24676 5' -54.9 NC_005264.1 + 43613 0.67 0.921916
Target:  5'- cGAUUGCGCGCcaaaccucGCGUgGuCGCGCGUUa -3'
miRNA:   3'- cUUAGCGCGUG--------CGCAaC-GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 44935 0.73 0.649455
Target:  5'- cGAAcCGCGgGCcCGUUGCGCGCGUg- -3'
miRNA:   3'- -CUUaGCGCgUGcGCAACGCGUGCAgc -5'
24676 5' -54.9 NC_005264.1 + 45559 0.7 0.787027
Target:  5'- -cAUCGCGCACGCGUacgauaggUG-GCACGa-- -3'
miRNA:   3'- cuUAGCGCGUGCGCA--------ACgCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 47680 0.71 0.739727
Target:  5'- ---aCGCGUugGCGguuuccgcuuUUGCGC-CGUCGa -3'
miRNA:   3'- cuuaGCGCGugCGC----------AACGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 48343 0.73 0.618807
Target:  5'- gGAGUUgGCGCACGCcauggcggccucGUUGCGCagugccGCGUCGa -3'
miRNA:   3'- -CUUAG-CGCGUGCG------------CAACGCG------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 50565 0.74 0.598411
Target:  5'- ----gGCGCGCGCGUgcgggaaGCGCACG-CGg -3'
miRNA:   3'- cuuagCGCGUGCGCAa------CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 50810 0.69 0.847191
Target:  5'- cGGAUCgGCGCGCGCGcagguUUGCGUguagACGUg- -3'
miRNA:   3'- -CUUAG-CGCGUGCGC-----AACGCG----UGCAgc -5'
24676 5' -54.9 NC_005264.1 + 51261 0.67 0.918555
Target:  5'- gGAAUCGCGgaacaucuguCGCGCGUUaccacgagcaggaagGCacccucguGCACGUCGg -3'
miRNA:   3'- -CUUAGCGC----------GUGCGCAA---------------CG--------CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 54051 0.68 0.891313
Target:  5'- cGAcgUGCGCaACGCG-UGCGCGauUCGc -3'
miRNA:   3'- -CUuaGCGCG-UGCGCaACGCGUgcAGC- -5'
24676 5' -54.9 NC_005264.1 + 56925 0.67 0.904256
Target:  5'- ----gGCGUACGUGcgugGCGCACGgggCGa -3'
miRNA:   3'- cuuagCGCGUGCGCaa--CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 58769 0.67 0.932502
Target:  5'- ----gGCGCACGCGcgguggucgGCGCAgaggaUGUCGg -3'
miRNA:   3'- cuuagCGCGUGCGCaa-------CGCGU-----GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 59014 0.67 0.932502
Target:  5'- aGAAUCGCGgAgGCaGgcGCGuCAgGUCGg -3'
miRNA:   3'- -CUUAGCGCgUgCG-CaaCGC-GUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 59828 0.7 0.787027
Target:  5'- aGggUCGCGUACGCca-GCGCGCa--- -3'
miRNA:   3'- -CuuAGCGCGUGCGcaaCGCGUGcagc -5'
24676 5' -54.9 NC_005264.1 + 60704 0.71 0.729949
Target:  5'- gGAAUCGCGCuuagaGCGUauuuccugGCGCAUGUgGa -3'
miRNA:   3'- -CUUAGCGCGug---CGCAa-------CGCGUGCAgC- -5'
24676 5' -54.9 NC_005264.1 + 61537 0.66 0.942136
Target:  5'- -uAUCGCGCugGgcauaGcUG-GCACGUCGg -3'
miRNA:   3'- cuUAGCGCGugCg----CaACgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 62470 0.75 0.508606
Target:  5'- aGAAUCG-GUguuGCGCGUcgUGCGCGCGUCc -3'
miRNA:   3'- -CUUAGCgCG---UGCGCA--ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 66320 0.66 0.95483
Target:  5'- -uGUUGCGCG-GCGUcGUGCAUGUUu -3'
miRNA:   3'- cuUAGCGCGUgCGCAaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 66521 0.71 0.737779
Target:  5'- cGAG-CGUGCccugacgacgacCGCGUUGCGgGCGUCGg -3'
miRNA:   3'- -CUUaGCGCGu-----------GCGCAACGCgUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.