Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24676 | 5' | -54.9 | NC_005264.1 | + | 1121 | 0.66 | 0.937438 |
Target: 5'- -uAUgGCGCGgGuCGUUGUGCAUG-CGg -3' miRNA: 3'- cuUAgCGCGUgC-GCAACGCGUGCaGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 6157 | 0.71 | 0.749411 |
Target: 5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3' miRNA: 3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 8311 | 0.67 | 0.904256 |
Target: 5'- -cAUCGCcgGCACGCuuguUUGCGCGCGg-- -3' miRNA: 3'- cuUAGCG--CGUGCGc---AACGCGUGCagc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 9469 | 0.67 | 0.921916 |
Target: 5'- --cUCGCGCaACGC-UU-CGCGCGUCu -3' miRNA: 3'- cuuAGCGCG-UGCGcAAcGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 19761 | 0.66 | 0.95083 |
Target: 5'- -cAUCGCGC-CGCGaUUGUGaCACG-Ca -3' miRNA: 3'- cuUAGCGCGuGCGC-AACGC-GUGCaGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 20528 | 0.75 | 0.528153 |
Target: 5'- ----gGgGCACGCGUUGCGCcCGUUGc -3' miRNA: 3'- cuuagCgCGUGCGCAACGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 22158 | 0.7 | 0.805037 |
Target: 5'- aGAUUGCGC-CGCGggcCGUACGUCa -3' miRNA: 3'- cUUAGCGCGuGCGCaacGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 23280 | 0.71 | 0.768461 |
Target: 5'- --uUCGCGCGCGCGUgcagcgaGCGCAaacaUCGc -3' miRNA: 3'- cuuAGCGCGUGCGCAa------CGCGUgc--AGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 24495 | 0.66 | 0.95483 |
Target: 5'- uAGUCGCGUucggGCGCcuuGUcGCGCACG-CGc -3' miRNA: 3'- cUUAGCGCG----UGCG---CAaCGCGUGCaGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 25200 | 0.7 | 0.813813 |
Target: 5'- ---cCGCGUACGUGUUGgCGCACa--- -3' miRNA: 3'- cuuaGCGCGUGCGCAAC-GCGUGcagc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 27934 | 0.7 | 0.805037 |
Target: 5'- ----gGUGUugGCGUUcUGCGCGUCGg -3' miRNA: 3'- cuuagCGCGugCGCAAcGCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 29201 | 0.73 | 0.6086 |
Target: 5'- ---gCGUGCAaGUGUUGCGUGCGUCa -3' miRNA: 3'- cuuaGCGCGUgCGCAACGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 29659 | 0.67 | 0.932502 |
Target: 5'- cGGUC-CGC-CGCGUUGCGUagcaucagggaGCGUCc -3' miRNA: 3'- cUUAGcGCGuGCGCAACGCG-----------UGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 30630 | 0.68 | 0.891313 |
Target: 5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3' miRNA: 3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 31045 | 0.71 | 0.739727 |
Target: 5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3' miRNA: 3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 31709 | 0.71 | 0.749411 |
Target: 5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3' miRNA: 3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 32917 | 0.72 | 0.669833 |
Target: 5'- cGAUCGCGCAgggguCGCGggGCGcCGCGUg- -3' miRNA: 3'- cUUAGCGCGU-----GCGCaaCGC-GUGCAgc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 32987 | 0.71 | 0.758992 |
Target: 5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3' miRNA: 3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 33495 | 0.66 | 0.95083 |
Target: 5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3' miRNA: 3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 37658 | 0.75 | 0.508606 |
Target: 5'- -cAUCGUGCACGCGaUGCGCgACGggCGc -3' miRNA: 3'- cuUAGCGCGUGCGCaACGCG-UGCa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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