miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 108786 1.1 0.003619
Target:  5'- cGAAUCGCGCACGCGUUGCGCACGUCGg -3'
miRNA:   3'- -CUUAGCGCGUGCGCAACGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 27934 0.7 0.805037
Target:  5'- ----gGUGUugGCGUUcUGCGCGUCGg -3'
miRNA:   3'- cuuagCGCGugCGCAAcGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 66608 0.69 0.830862
Target:  5'- ---cUGCGC-CGCGUUGCcgGCGcCGUCGc -3'
miRNA:   3'- cuuaGCGCGuGCGCAACG--CGU-GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 75683 0.66 0.95483
Target:  5'- gGAGUCGCGCGCa----GCGC-CGUCu -3'
miRNA:   3'- -CUUAGCGCGUGcgcaaCGCGuGCAGc -5'
24676 5' -54.9 NC_005264.1 + 109264 0.75 0.528153
Target:  5'- --cUCGC-CACGCGUcGgGCGCGUCGu -3'
miRNA:   3'- cuuAGCGcGUGCGCAaCgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 50565 0.74 0.598411
Target:  5'- ----gGCGCGCGCGUgcgggaaGCGCACG-CGg -3'
miRNA:   3'- cuuagCGCGUGCGCAa------CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 48343 0.73 0.618807
Target:  5'- gGAGUUgGCGCACGCcauggcggccucGUUGCGCagugccGCGUCGa -3'
miRNA:   3'- -CUUAG-CGCGUGCG------------CAACGCG------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 32917 0.72 0.669833
Target:  5'- cGAUCGCGCAgggguCGCGggGCGcCGCGUg- -3'
miRNA:   3'- cUUAGCGCGU-----GCGCaaCGC-GUGCAgc -5'
24676 5' -54.9 NC_005264.1 + 47680 0.71 0.739727
Target:  5'- ---aCGCGUugGCGguuuccgcuuUUGCGC-CGUCGa -3'
miRNA:   3'- cuuaGCGCGugCGC----------AACGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 59828 0.7 0.787027
Target:  5'- aGggUCGCGUACGCca-GCGCGCa--- -3'
miRNA:   3'- -CuuAGCGCGUGCGcaaCGCGUGcagc -5'
24676 5' -54.9 NC_005264.1 + 125184 0.71 0.749411
Target:  5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3'
miRNA:   3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 156686 0.71 0.739727
Target:  5'- ---aCGUGCACGCGaUGCGCgACGggCGc -3'
miRNA:   3'- cuuaGCGCGUGCGCaACGCG-UGCa-GC- -5'
24676 5' -54.9 NC_005264.1 + 109971 0.77 0.407516
Target:  5'- --cUCGCuCGCGCG-UGUGCACGUCGu -3'
miRNA:   3'- cuuAGCGcGUGCGCaACGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 150735 0.71 0.749411
Target:  5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3'
miRNA:   3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 62470 0.75 0.508606
Target:  5'- aGAAUCG-GUguuGCGCGUcgUGCGCGCGUCc -3'
miRNA:   3'- -CUUAGCgCG---UGCGCA--ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 66521 0.71 0.737779
Target:  5'- cGAG-CGUGCccugacgacgacCGCGUUGCGgGCGUCGg -3'
miRNA:   3'- -CUUaGCGCGu-----------GCGCAACGCgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 152014 0.71 0.758992
Target:  5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3'
miRNA:   3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5'
24676 5' -54.9 NC_005264.1 + 22158 0.7 0.805037
Target:  5'- aGAUUGCGC-CGCGggcCGUACGUCa -3'
miRNA:   3'- cUUAGCGCGuGCGCaacGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 20528 0.75 0.528153
Target:  5'- ----gGgGCACGCGUUGCGCcCGUUGc -3'
miRNA:   3'- cuuagCgCGUGCGCAACGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 96658 0.73 0.6086
Target:  5'- -cGUCGCGCGCgGCGUUaGCGCACcccCGg -3'
miRNA:   3'- cuUAGCGCGUG-CGCAA-CGCGUGca-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.