miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 108786 1.1 0.003619
Target:  5'- cGAAUCGCGCACGCGUUGCGCACGUCGg -3'
miRNA:   3'- -CUUAGCGCGUGCGCAACGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 109169 0.79 0.350097
Target:  5'- aGAUCGCGCAUGCG--GCGUAUGUCa -3'
miRNA:   3'- cUUAGCGCGUGCGCaaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 109971 0.77 0.407516
Target:  5'- --cUCGCuCGCGCG-UGUGCACGUCGu -3'
miRNA:   3'- cuuAGCGcGUGCGCaACGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 62470 0.75 0.508606
Target:  5'- aGAAUCG-GUguuGCGCGUcgUGCGCGCGUCc -3'
miRNA:   3'- -CUUAGCgCG---UGCGCA--ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 37658 0.75 0.508606
Target:  5'- -cAUCGUGCACGCGaUGCGCgACGggCGc -3'
miRNA:   3'- cuUAGCGCGUGCGCaACGCG-UGCa-GC- -5'
24676 5' -54.9 NC_005264.1 + 109264 0.75 0.528153
Target:  5'- --cUCGC-CACGCGUcGgGCGCGUCGu -3'
miRNA:   3'- cuuAGCGcGUGCGCAaCgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 20528 0.75 0.528153
Target:  5'- ----gGgGCACGCGUUGCGCcCGUUGc -3'
miRNA:   3'- cuuagCgCGUGCGCAACGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 89010 0.74 0.578114
Target:  5'- aGAUCGCGCA-GCuc-GCGCAUGUCGg -3'
miRNA:   3'- cUUAGCGCGUgCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 50565 0.74 0.598411
Target:  5'- ----gGCGCGCGCGUgcgggaaGCGCACG-CGg -3'
miRNA:   3'- cuuagCGCGUGCGCAa------CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 96658 0.73 0.6086
Target:  5'- -cGUCGCGCGCgGCGUUaGCGCACcccCGg -3'
miRNA:   3'- cuUAGCGCGUG-CGCAA-CGCGUGca-GC- -5'
24676 5' -54.9 NC_005264.1 + 29201 0.73 0.6086
Target:  5'- ---gCGUGCAaGUGUUGCGUGCGUCa -3'
miRNA:   3'- cuuaGCGCGUgCGCAACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 48343 0.73 0.618807
Target:  5'- gGAGUUgGCGCACGCcauggcggccucGUUGCGCagugccGCGUCGa -3'
miRNA:   3'- -CUUAG-CGCGUGCG------------CAACGCG------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 44935 0.73 0.649455
Target:  5'- cGAAcCGCGgGCcCGUUGCGCGCGUg- -3'
miRNA:   3'- -CUUaGCGCgUGcGCAACGCGUGCAgc -5'
24676 5' -54.9 NC_005264.1 + 130550 0.72 0.669833
Target:  5'- -cGUCGCgGCGCGUGUgcuacGCGCAgGUCu -3'
miRNA:   3'- cuUAGCG-CGUGCGCAa----CGCGUgCAGc -5'
24676 5' -54.9 NC_005264.1 + 32917 0.72 0.669833
Target:  5'- cGAUCGCGCAgggguCGCGggGCGcCGCGUg- -3'
miRNA:   3'- cUUAGCGCGU-----GCGCaaCGC-GUGCAgc -5'
24676 5' -54.9 NC_005264.1 + 68431 0.72 0.67998
Target:  5'- cGAUCGCGCAguccgcgcCGCGgucUGCGCGCGg-- -3'
miRNA:   3'- cUUAGCGCGU--------GCGCa--ACGCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 90822 0.72 0.690088
Target:  5'- --cUCGCGUgugGCGgccGCGCACGUCGa -3'
miRNA:   3'- cuuAGCGCGug-CGCaa-CGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 131601 0.72 0.700148
Target:  5'- gGAGggaGCgGCGCGCGUggGCGCGCG-CGg -3'
miRNA:   3'- -CUUag-CG-CGUGCGCAa-CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 60704 0.71 0.729949
Target:  5'- gGAAUCGCGCuuagaGCGUauuuccugGCGCAUGUgGa -3'
miRNA:   3'- -CUUAGCGCGug---CGCAa-------CGCGUGCAgC- -5'
24676 5' -54.9 NC_005264.1 + 66521 0.71 0.737779
Target:  5'- cGAG-CGUGCccugacgacgacCGCGUUGCGgGCGUCGg -3'
miRNA:   3'- -CUUaGCGCGu-----------GCGCAACGCgUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.