Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24676 | 5' | -54.9 | NC_005264.1 | + | 42056 | 0.68 | 0.891313 |
Target: 5'- cAAUCGCGUugccCGCGgcGCGUGgCGUCa -3' miRNA: 3'- cUUAGCGCGu---GCGCaaCGCGU-GCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 66608 | 0.69 | 0.830862 |
Target: 5'- ---cUGCGC-CGCGUUGCcgGCGcCGUCGc -3' miRNA: 3'- cuuaGCGCGuGCGCAACG--CGU-GCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 156686 | 0.71 | 0.739727 |
Target: 5'- ---aCGUGCACGCGaUGCGCgACGggCGc -3' miRNA: 3'- cuuaGCGCGUGCGCaACGCG-UGCa-GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 20528 | 0.75 | 0.528153 |
Target: 5'- ----gGgGCACGCGUUGCGCcCGUUGc -3' miRNA: 3'- cuuagCgCGUGCGCAACGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 58769 | 0.67 | 0.932502 |
Target: 5'- ----gGCGCACGCGcgguggucgGCGCAgaggaUGUCGg -3' miRNA: 3'- cuuagCGCGUGCGCaa-------CGCGU-----GCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 109371 | 0.67 | 0.916266 |
Target: 5'- ---gCGaUGUGCGCGUUGCGCcuagucaagucgGCGUUGg -3' miRNA: 3'- cuuaGC-GCGUGCGCAACGCG------------UGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 27934 | 0.7 | 0.805037 |
Target: 5'- ----gGUGUugGCGUUcUGCGCGUCGg -3' miRNA: 3'- cuuagCGCGugCGCAAcGCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 62470 | 0.75 | 0.508606 |
Target: 5'- aGAAUCG-GUguuGCGCGUcgUGCGCGCGUCc -3' miRNA: 3'- -CUUAGCgCG---UGCGCA--ACGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 79717 | 0.67 | 0.904256 |
Target: 5'- ---aCGCGCcucCGCGgccuugGCGCcCGUCGg -3' miRNA: 3'- cuuaGCGCGu--GCGCaa----CGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 109971 | 0.77 | 0.407516 |
Target: 5'- --cUCGCuCGCGCG-UGUGCACGUCGu -3' miRNA: 3'- cuuAGCGcGUGCGCaACGCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 22158 | 0.7 | 0.805037 |
Target: 5'- aGAUUGCGC-CGCGggcCGUACGUCa -3' miRNA: 3'- cUUAGCGCGuGCGCaacGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 149657 | 0.68 | 0.891313 |
Target: 5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3' miRNA: 3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 150735 | 0.71 | 0.749411 |
Target: 5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3' miRNA: 3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 47680 | 0.71 | 0.739727 |
Target: 5'- ---aCGCGUugGCGguuuccgcuuUUGCGC-CGUCGa -3' miRNA: 3'- cuuaGCGCGugCGC----------AACGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 48343 | 0.73 | 0.618807 |
Target: 5'- gGAGUUgGCGCACGCcauggcggccucGUUGCGCagugccGCGUCGa -3' miRNA: 3'- -CUUAG-CGCGUGCG------------CAACGCG------UGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 109264 | 0.75 | 0.528153 |
Target: 5'- --cUCGC-CACGCGUcGgGCGCGUCGu -3' miRNA: 3'- cuuAGCGcGUGCGCAaCgCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 100919 | 0.66 | 0.946599 |
Target: 5'- --uUCGCGCAaGCGgcgGCGCcCGUgCGc -3' miRNA: 3'- cuuAGCGCGUgCGCaa-CGCGuGCA-GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 1121 | 0.66 | 0.937438 |
Target: 5'- -uAUgGCGCGgGuCGUUGUGCAUG-CGg -3' miRNA: 3'- cuUAgCGCGUgC-GCAACGCGUGCaGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 91376 | 0.67 | 0.921916 |
Target: 5'- ---aCGCGCGagaG-GUUGUGCACGUUa -3' miRNA: 3'- cuuaGCGCGUg--CgCAACGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 51261 | 0.67 | 0.918555 |
Target: 5'- gGAAUCGCGgaacaucuguCGCGCGUUaccacgagcaggaagGCacccucguGCACGUCGg -3' miRNA: 3'- -CUUAGCGC----------GUGCGCAA---------------CG--------CGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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