miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24698 3' -64.6 NC_005264.1 + 61441 0.69 0.362259
Target:  5'- -cGGCCcGCUCCUcGGCGccgaguuGCUcGAGCGCc -3'
miRNA:   3'- guCCGGaCGGGGA-CCGC-------CGA-CUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 67029 0.68 0.385526
Target:  5'- -cGGCCUugcgcagGCCCCcgacguaaGGCGGCgGAaGCGCc -3'
miRNA:   3'- guCCGGA-------CGGGGa-------CCGCCGaCU-CGCG- -5'
24698 3' -64.6 NC_005264.1 + 68465 0.67 0.453052
Target:  5'- aGGGCCUccacuaauauugGCCa--GGCGGCUGuAGCGg -3'
miRNA:   3'- gUCCGGA------------CGGggaCCGCCGAC-UCGCg -5'
24698 3' -64.6 NC_005264.1 + 69858 0.66 0.525582
Target:  5'- gGGGCaucGCCCCUacGGCGGac--GCGCu -3'
miRNA:   3'- gUCCGga-CGGGGA--CCGCCgacuCGCG- -5'
24698 3' -64.6 NC_005264.1 + 72750 0.7 0.292596
Target:  5'- gCGGGCCUGUCCgCUGGgaucUGGUUucuGGCGCa -3'
miRNA:   3'- -GUCCGGACGGG-GACC----GCCGAc--UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 75197 0.68 0.394301
Target:  5'- cCAGGUCccgcGCCCCacGCGGCUGcaucggcccuGCGCg -3'
miRNA:   3'- -GUCCGGa---CGGGGacCGCCGACu---------CGCG- -5'
24698 3' -64.6 NC_005264.1 + 81881 0.69 0.340712
Target:  5'- -uGGUCgaugGCgCCUUGGCGGCgaUGGGCGg -3'
miRNA:   3'- guCCGGa---CG-GGGACCGCCG--ACUCGCg -5'
24698 3' -64.6 NC_005264.1 + 82255 0.67 0.46183
Target:  5'- gGGGCUcGCgaCaGGCGGCaccgGAGCGCg -3'
miRNA:   3'- gUCCGGaCGggGaCCGCCGa---CUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 84621 0.67 0.427276
Target:  5'- gCAGcGUUgcuccguacgUGCCCCUGGCGGUguccGuAGCGUa -3'
miRNA:   3'- -GUC-CGG----------ACGGGGACCGCCGa---C-UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 87633 0.66 0.501469
Target:  5'- aGGGCCgaugcaGCCgcguggggcgcgggaCCUGGCGGCaacGGGCaGCu -3'
miRNA:   3'- gUCCGGa-----CGG---------------GGACCGCCGa--CUCG-CG- -5'
24698 3' -64.6 NC_005264.1 + 88010 0.68 0.389499
Target:  5'- aAGaCCUGCCCCUGGUgcccacguuccucggGGCcGaAGCGUa -3'
miRNA:   3'- gUCcGGACGGGGACCG---------------CCGaC-UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 88194 0.74 0.159676
Target:  5'- -cGGCCUGCaCCCUGGguuCGcGCUGAcgguaGCGCg -3'
miRNA:   3'- guCCGGACG-GGGACC---GC-CGACU-----CGCG- -5'
24698 3' -64.6 NC_005264.1 + 93489 0.67 0.444365
Target:  5'- gAGGC--GCUgCUGGCGGCcG-GCGCg -3'
miRNA:   3'- gUCCGgaCGGgGACCGCCGaCuCGCG- -5'
24698 3' -64.6 NC_005264.1 + 94590 0.67 0.483255
Target:  5'- gCAGGCC-GCCCgCggcgcgggcauggcuUGGCGGUgcGGCGUg -3'
miRNA:   3'- -GUCCGGaCGGG-G---------------ACCGCCGacUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 104832 0.68 0.40239
Target:  5'- -cGGCCUGUCCgCcggGGCcGCUGAGC-Ca -3'
miRNA:   3'- guCCGGACGGG-Ga--CCGcCGACUCGcG- -5'
24698 3' -64.6 NC_005264.1 + 107191 0.67 0.479651
Target:  5'- gGGGCC-GCCaaaaCUaaaGGCGGCgGcGCGCg -3'
miRNA:   3'- gUCCGGaCGGg---GA---CCGCCGaCuCGCG- -5'
24698 3' -64.6 NC_005264.1 + 114783 0.67 0.470698
Target:  5'- -cGGCCgaUGUCCCUGGCcaauGCUccauGCGCa -3'
miRNA:   3'- guCCGG--ACGGGGACCGc---CGAcu--CGCG- -5'
24698 3' -64.6 NC_005264.1 + 118165 0.69 0.348036
Target:  5'- -uGGCC-GCCCauguCUGGCGGCUcGucgaacuuGGCGCa -3'
miRNA:   3'- guCCGGaCGGG----GACCGCCGA-C--------UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 120273 0.67 0.427276
Target:  5'- -uGGCUcGCCUCcGGCaaGGCUGccGGCGCg -3'
miRNA:   3'- guCCGGaCGGGGaCCG--CCGAC--UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 122508 0.71 0.27986
Target:  5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3'
miRNA:   3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.