Results 1 - 20 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 3481 | 0.71 | 0.27986 |
Target: 5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3' miRNA: 3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 4333 | 1.1 | 0.000375 |
Target: 5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3' miRNA: 3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 4591 | 0.69 | 0.355472 |
Target: 5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3' miRNA: 3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 9892 | 0.68 | 0.418879 |
Target: 5'- -cGGCCUucccagCCCUGGCGGCaGAaaggcgGCGCu -3' miRNA: 3'- guCCGGAcg----GGGACCGCCGaCU------CGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 10885 | 0.66 | 0.529331 |
Target: 5'- gGGGCCguggggaauucccggUGCCCggucaUUGGuCGGCUGgauGGCGUg -3' miRNA: 3'- gUCCGG---------------ACGGG-----GACC-GCCGAC---UCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 12258 | 0.69 | 0.355472 |
Target: 5'- aCGGGCCgucccugagaUGacgaugccguaCCCUGGCGGCaGGGCGg -3' miRNA: 3'- -GUCCGG----------ACg----------GGGACCGCCGaCUCGCg -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 14438 | 0.69 | 0.3335 |
Target: 5'- -cGGCCUGCCCUccccaauaggcaUGGCGGCaagccucucGCGUg -3' miRNA: 3'- guCCGGACGGGG------------ACCGCCGacu------CGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 19203 | 0.66 | 0.525582 |
Target: 5'- -cGGCUUGCCCaUGGUGuGCaggGAGCa- -3' miRNA: 3'- guCCGGACGGGgACCGC-CGa--CUCGcg -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 23653 | 0.66 | 0.497801 |
Target: 5'- aCAGGaCCgGCa--UGGCGGUaUGGGCGCc -3' miRNA: 3'- -GUCC-GGaCGgggACCGCCG-ACUCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 29456 | 0.67 | 0.47606 |
Target: 5'- -cGGUCgGCCCCacgcggauuggggGGCGGUgcAGCGCa -3' miRNA: 3'- guCCGGaCGGGGa------------CCGCCGacUCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 34120 | 0.67 | 0.435772 |
Target: 5'- -uGGCCuucgcUGCCUCUGGUGaC-GGGCGCg -3' miRNA: 3'- guCCGG-----ACGGGGACCGCcGaCUCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 38335 | 0.68 | 0.386318 |
Target: 5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3' miRNA: 3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 39144 | 0.66 | 0.538747 |
Target: 5'- -cGGCCUGCUgugagccaccgacguCCgaauuauUGGCUGGGCGCg -3' miRNA: 3'- guCCGGACGG---------------GGacc----GCCGACUCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 39799 | 0.68 | 0.386318 |
Target: 5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3' miRNA: 3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 40054 | 0.66 | 0.506992 |
Target: 5'- aGGGCCcgcagcGCCCC-GGCGGCaaGAG-GCc -3' miRNA: 3'- gUCCGGa-----CGGGGaCCGCCGa-CUCgCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 46598 | 0.67 | 0.469807 |
Target: 5'- gAGGCuCUGUCCCUGcGgGGCgagGAcggcuccGUGCa -3' miRNA: 3'- gUCCG-GACGGGGAC-CgCCGa--CU-------CGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 54227 | 0.7 | 0.312541 |
Target: 5'- gAGGCCUGUgUCgaGGCGGCcccGCGCg -3' miRNA: 3'- gUCCGGACGgGGa-CCGCCGacuCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 57471 | 0.68 | 0.385526 |
Target: 5'- --cGCCUGUuuUCCUGGCGGCgGcggcgaagaugcuGGCGCg -3' miRNA: 3'- gucCGGACG--GGGACCGCCGaC-------------UCGCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 57898 | 0.67 | 0.479651 |
Target: 5'- gAGGCUcgGCgCUUGGCacGGCUGGGgGUu -3' miRNA: 3'- gUCCGGa-CGgGGACCG--CCGACUCgCG- -5' |
|||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 58258 | 0.68 | 0.40239 |
Target: 5'- -cGGCCcGaUCCCgugGGCGGCauGGCGCu -3' miRNA: 3'- guCCGGaC-GGGGa--CCGCCGacUCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home