Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 154569 | 0.66 | 0.534974 |
Target: 5'- -cGGCCUGCaaCgaGGCGGacaccaGGGCGCc -3' miRNA: 3'- guCCGGACGg-GgaCCGCCga----CUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 19203 | 0.66 | 0.525582 |
Target: 5'- -cGGCUUGCCCaUGGUGuGCaggGAGCa- -3' miRNA: 3'- guCCGGACGGGgACCGC-CGa--CUCGcg -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 69858 | 0.66 | 0.525582 |
Target: 5'- gGGGCaucGCCCCUacGGCGGac--GCGCu -3' miRNA: 3'- gUCCGga-CGGGGA--CCGCCgacuCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 39144 | 0.66 | 0.538747 |
Target: 5'- -cGGCCUGCUgugagccaccgacguCCgaauuauUGGCUGGGCGCg -3' miRNA: 3'- guCCGGACGG---------------GGacc----GCCGACUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 143461 | 0.66 | 0.488687 |
Target: 5'- cCAGGa-UGCCCgUGG-GGCauUGGGUGCg -3' miRNA: 3'- -GUCCggACGGGgACCgCCG--ACUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 159081 | 0.66 | 0.506992 |
Target: 5'- aGGGCCcgcagcGCCCC-GGCGGCaaGAG-GCc -3' miRNA: 3'- gUCCGGa-----CGGGGaCCGCCGa-CUCgCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 129911 | 0.66 | 0.529331 |
Target: 5'- gGGGCCguggggaauucccggUGCCCggucaUUGGuCGGCUGgauGGCGUg -3' miRNA: 3'- gUCCGG---------------ACGGG-----GACC-GCCGAC---UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 23653 | 0.66 | 0.497801 |
Target: 5'- aCAGGaCCgGCa--UGGCGGUaUGGGCGCc -3' miRNA: 3'- -GUCC-GGaCGgggACCGCCG-ACUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 87633 | 0.66 | 0.501469 |
Target: 5'- aGGGCCgaugcaGCCgcguggggcgcgggaCCUGGCGGCaacGGGCaGCu -3' miRNA: 3'- gUCCGGa-----CGG---------------GGACCGCCGa--CUCG-CG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 40054 | 0.66 | 0.506992 |
Target: 5'- aGGGCCcgcagcGCCCC-GGCGGCaaGAG-GCc -3' miRNA: 3'- gUCCGGa-----CGGGGaCCGCCGa-CUCgCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 160108 | 0.66 | 0.506992 |
Target: 5'- aAGGCCUagugacGCgCCUGGgGGC--AGUGCu -3' miRNA: 3'- gUCCGGA------CGgGGACCgCCGacUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 10885 | 0.66 | 0.529331 |
Target: 5'- gGGGCCguggggaauucccggUGCCCggucaUUGGuCGGCUGgauGGCGUg -3' miRNA: 3'- gUCCGG---------------ACGGG-----GACC-GCCGAC---UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 135583 | 0.66 | 0.525582 |
Target: 5'- aGGGCCUcUUCCUGGCuaCUagaGAGCGCa -3' miRNA: 3'- gUCCGGAcGGGGACCGccGA---CUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 131710 | 0.66 | 0.506992 |
Target: 5'- uGGGCCUGCgC--GGCGuuGCUG-GCGCu -3' miRNA: 3'- gUCCGGACGgGgaCCGC--CGACuCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 46598 | 0.67 | 0.469807 |
Target: 5'- gAGGCuCUGUCCCUGcGgGGCgagGAcggcuccGUGCa -3' miRNA: 3'- gUCCG-GACGGGGAC-CgCCGa--CU-------CGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 93489 | 0.67 | 0.444365 |
Target: 5'- gAGGC--GCUgCUGGCGGCcG-GCGCg -3' miRNA: 3'- gUCCGgaCGGgGACCGCCGaCuCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 120273 | 0.67 | 0.427276 |
Target: 5'- -uGGCUcGCCUCcGGCaaGGCUGccGGCGCg -3' miRNA: 3'- guCCGGaCGGGGaCCG--CCGAC--UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 153511 | 0.67 | 0.444365 |
Target: 5'- -cGGCC-GCCCCUGGCGGg-GA-CGa -3' miRNA: 3'- guCCGGaCGGGGACCGCCgaCUcGCg -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 68465 | 0.67 | 0.453052 |
Target: 5'- aGGGCCUccacuaauauugGCCa--GGCGGCUGuAGCGg -3' miRNA: 3'- gUCCGGA------------CGGggaCCGCCGAC-UCGCg -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 82255 | 0.67 | 0.46183 |
Target: 5'- gGGGCUcGCgaCaGGCGGCaccgGAGCGCg -3' miRNA: 3'- gUCCGGaCGggGaCCGCCGa---CUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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