miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24698 3' -64.6 NC_005264.1 + 123360 1.1 0.000375
Target:  5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3'
miRNA:   3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 46598 0.67 0.469807
Target:  5'- gAGGCuCUGUCCCUGcGgGGCgagGAcggcuccGUGCa -3'
miRNA:   3'- gUCCG-GACGGGGAC-CgCCGa--CU-------CGCG- -5'
24698 3' -64.6 NC_005264.1 + 107191 0.67 0.479651
Target:  5'- gGGGCC-GCCaaaaCUaaaGGCGGCgGcGCGCg -3'
miRNA:   3'- gUCCGGaCGGg---GA---CCGCCGaCuCGCG- -5'
24698 3' -64.6 NC_005264.1 + 39144 0.66 0.538747
Target:  5'- -cGGCCUGCUgugagccaccgacguCCgaauuauUGGCUGGGCGCg -3'
miRNA:   3'- guCCGGACGG---------------GGacc----GCCGACUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 123618 0.69 0.355472
Target:  5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3'
miRNA:   3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 12258 0.69 0.355472
Target:  5'- aCGGGCCgucccugagaUGacgaugccguaCCCUGGCGGCaGGGCGg -3'
miRNA:   3'- -GUCCGG----------ACg----------GGGACCGCCGaCUCGCg -5'
24698 3' -64.6 NC_005264.1 + 57471 0.68 0.385526
Target:  5'- --cGCCUGUuuUCCUGGCGGCgGcggcgaagaugcuGGCGCg -3'
miRNA:   3'- gucCGGACG--GGGACCGCCGaC-------------UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 67029 0.68 0.385526
Target:  5'- -cGGCCUugcgcagGCCCCcgacguaaGGCGGCgGAaGCGCc -3'
miRNA:   3'- guCCGGA-------CGGGGa-------CCGCCGaCU-CGCG- -5'
24698 3' -64.6 NC_005264.1 + 88010 0.68 0.389499
Target:  5'- aAGaCCUGCCCCUGGUgcccacguuccucggGGCcGaAGCGUa -3'
miRNA:   3'- gUCcGGACGGGGACCG---------------CCGaC-UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 93489 0.67 0.444365
Target:  5'- gAGGC--GCUgCUGGCGGCcG-GCGCg -3'
miRNA:   3'- gUCCGgaCGGgGACCGCCGaCuCGCG- -5'
24698 3' -64.6 NC_005264.1 + 128918 0.68 0.418879
Target:  5'- -cGGCCUucccagCCCUGGCGGCaGAaaggcgGCGCu -3'
miRNA:   3'- guCCGGAcg----GGGACCGCCGaCU------CGCG- -5'
24698 3' -64.6 NC_005264.1 + 158825 0.68 0.386318
Target:  5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3'
miRNA:   3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5'
24698 3' -64.6 NC_005264.1 + 88194 0.74 0.159676
Target:  5'- -cGGCCUGCaCCCUGGguuCGcGCUGAcgguaGCGCg -3'
miRNA:   3'- guCCGGACG-GGGACC---GC-CGACU-----CGCG- -5'
24698 3' -64.6 NC_005264.1 + 84621 0.67 0.427276
Target:  5'- gCAGcGUUgcuccguacgUGCCCCUGGCGGUguccGuAGCGUa -3'
miRNA:   3'- -GUC-CGG----------ACGGGGACCGCCGa---C-UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 122508 0.71 0.27986
Target:  5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3'
miRNA:   3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5'
24698 3' -64.6 NC_005264.1 + 157362 0.68 0.386318
Target:  5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3'
miRNA:   3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5'
24698 3' -64.6 NC_005264.1 + 34120 0.67 0.435772
Target:  5'- -uGGCCuucgcUGCCUCUGGUGaC-GGGCGCg -3'
miRNA:   3'- guCCGG-----ACGGGGACCGCcGaCUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 57898 0.67 0.479651
Target:  5'- gAGGCUcgGCgCUUGGCacGGCUGGGgGUu -3'
miRNA:   3'- gUCCGGa-CGgGGACCG--CCGACUCgCG- -5'
24698 3' -64.6 NC_005264.1 + 118165 0.69 0.348036
Target:  5'- -uGGCC-GCCCauguCUGGCGGCUcGucgaacuuGGCGCa -3'
miRNA:   3'- guCCGGaCGGG----GACCGCCGA-C--------UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 61441 0.69 0.362259
Target:  5'- -cGGCCcGCUCCUcGGCGccgaguuGCUcGAGCGCc -3'
miRNA:   3'- guCCGGaCGGGGA-CCGC-------CGA-CUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.