Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24698 | 3' | -64.6 | NC_005264.1 | + | 4333 | 1.1 | 0.000375 |
Target: 5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3' miRNA: 3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 123360 | 1.1 | 0.000375 |
Target: 5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3' miRNA: 3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 88194 | 0.74 | 0.159676 |
Target: 5'- -cGGCCUGCaCCCUGGguuCGcGCUGAcgguaGCGCg -3' miRNA: 3'- guCCGGACG-GGGACC---GC-CGACU-----CGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 122508 | 0.71 | 0.27986 |
Target: 5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3' miRNA: 3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 3481 | 0.71 | 0.27986 |
Target: 5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3' miRNA: 3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 72750 | 0.7 | 0.292596 |
Target: 5'- gCGGGCCUGUCCgCUGGgaucUGGUUucuGGCGCa -3' miRNA: 3'- -GUCCGGACGGG-GACC----GCCGAc--UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 151847 | 0.7 | 0.299132 |
Target: 5'- gGGGCCgccGCUCC-GGCGGCgacacgugggGGGCGUc -3' miRNA: 3'- gUCCGGa--CGGGGaCCGCCGa---------CUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 54227 | 0.7 | 0.312541 |
Target: 5'- gAGGCCUGUgUCgaGGCGGCcccGCGCg -3' miRNA: 3'- gUCCGGACGgGGa-CCGCCGacuCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 14438 | 0.69 | 0.3335 |
Target: 5'- -cGGCCUGCCCUccccaauaggcaUGGCGGCaagccucucGCGUg -3' miRNA: 3'- guCCGGACGGGG------------ACCGCCGacu------CGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 81881 | 0.69 | 0.340712 |
Target: 5'- -uGGUCgaugGCgCCUUGGCGGCgaUGGGCGg -3' miRNA: 3'- guCCGGa---CG-GGGACCGCCG--ACUCGCg -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 118165 | 0.69 | 0.348036 |
Target: 5'- -uGGCC-GCCCauguCUGGCGGCUcGucgaacuuGGCGCa -3' miRNA: 3'- guCCGGaCGGG----GACCGCCGA-C--------UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 12258 | 0.69 | 0.355472 |
Target: 5'- aCGGGCCgucccugagaUGacgaugccguaCCCUGGCGGCaGGGCGg -3' miRNA: 3'- -GUCCGG----------ACg----------GGGACCGCCGaCUCGCg -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 123618 | 0.69 | 0.355472 |
Target: 5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3' miRNA: 3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 4591 | 0.69 | 0.355472 |
Target: 5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3' miRNA: 3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 61441 | 0.69 | 0.362259 |
Target: 5'- -cGGCCcGCUCCUcGGCGccgaguuGCUcGAGCGCc -3' miRNA: 3'- guCCGGaCGGGGA-CCGC-------CGA-CUCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 156420 | 0.68 | 0.378443 |
Target: 5'- uCAGuGCCUGCggCUGGCGGCggUGAuCGCc -3' miRNA: 3'- -GUC-CGGACGggGACCGCCG--ACUcGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 67029 | 0.68 | 0.385526 |
Target: 5'- -cGGCCUugcgcagGCCCCcgacguaaGGCGGCgGAaGCGCc -3' miRNA: 3'- guCCGGA-------CGGGGa-------CCGCCGaCU-CGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 57471 | 0.68 | 0.385526 |
Target: 5'- --cGCCUGUuuUCCUGGCGGCgGcggcgaagaugcuGGCGCg -3' miRNA: 3'- gucCGGACG--GGGACCGCCGaC-------------UCGCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 39799 | 0.68 | 0.386318 |
Target: 5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3' miRNA: 3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5' |
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24698 | 3' | -64.6 | NC_005264.1 | + | 38335 | 0.68 | 0.386318 |
Target: 5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3' miRNA: 3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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