miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24698 5' -55 NC_005264.1 + 4367 1.08 0.003689
Target:  5'- aGCAUGCUUUCCACCGCCCCGGCAAAAc -3'
miRNA:   3'- -CGUACGAAAGGUGGCGGGGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 123394 1.08 0.003689
Target:  5'- aGCAUGCUUUCCACCGCCCCGGCAAAAc -3'
miRNA:   3'- -CGUACGAAAGGUGGCGGGGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 146268 0.82 0.19664
Target:  5'- uCAUGUgcgCCGCCGCCCCGGCGc-- -3'
miRNA:   3'- cGUACGaaaGGUGGCGGGGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 85931 0.78 0.343094
Target:  5'- cGCGU-CUgaggCCACCGUCCCGGCAAu- -3'
miRNA:   3'- -CGUAcGAaa--GGUGGCGGGGCCGUUuu -5'
24698 5' -55 NC_005264.1 + 30075 0.74 0.533283
Target:  5'- cGUcgGCg--CCGCCGCgCCCGGaCAGAAu -3'
miRNA:   3'- -CGuaCGaaaGGUGGCG-GGGCC-GUUUU- -5'
24698 5' -55 NC_005264.1 + 39533 0.73 0.552553
Target:  5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3'
miRNA:   3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5'
24698 5' -55 NC_005264.1 + 158560 0.73 0.552553
Target:  5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3'
miRNA:   3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5'
24698 5' -55 NC_005264.1 + 12019 0.72 0.615566
Target:  5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3'
miRNA:   3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5'
24698 5' -55 NC_005264.1 + 131046 0.72 0.615566
Target:  5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3'
miRNA:   3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5'
24698 5' -55 NC_005264.1 + 115023 0.72 0.615566
Target:  5'- uGCAgGCUcUUCUGCgccuuaugCGCCCCGGCGAAAg -3'
miRNA:   3'- -CGUaCGA-AAGGUG--------GCGGGGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 156003 0.72 0.619734
Target:  5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3'
miRNA:   3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5'
24698 5' -55 NC_005264.1 + 36976 0.72 0.619734
Target:  5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3'
miRNA:   3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5'
24698 5' -55 NC_005264.1 + 114218 0.72 0.625988
Target:  5'- cGCcgGCUUgcCCACCuCCCCGGCc--- -3'
miRNA:   3'- -CGuaCGAAa-GGUGGcGGGGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 151831 0.72 0.661409
Target:  5'- aGCGUaGCggaagacuggggCCGCCGCUCCGGCGGc- -3'
miRNA:   3'- -CGUA-CGaaa---------GGUGGCGGGGCCGUUuu -5'
24698 5' -55 NC_005264.1 + 37860 0.71 0.678001
Target:  5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3'
miRNA:   3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5'
24698 5' -55 NC_005264.1 + 156886 0.71 0.678001
Target:  5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3'
miRNA:   3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5'
24698 5' -55 NC_005264.1 + 146323 0.7 0.718958
Target:  5'- gGCGUGCUUguaccaUCCGuCUGCgCCGGCGu-- -3'
miRNA:   3'- -CGUACGAA------AGGU-GGCGgGGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 51423 0.7 0.738018
Target:  5'- cGCAUGgUUUCCggcagGCCGCCCUccacgaccuuguuGGCGAu- -3'
miRNA:   3'- -CGUACgAAAGG-----UGGCGGGG-------------CCGUUuu -5'
24698 5' -55 NC_005264.1 + 61428 0.7 0.748899
Target:  5'- cGUAUGCUUUCgGCgGCCCgcuccuCGGCGc-- -3'
miRNA:   3'- -CGUACGAAAGgUGgCGGG------GCCGUuuu -5'
24698 5' -55 NC_005264.1 + 38108 0.69 0.787285
Target:  5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3'
miRNA:   3'- cguACGAAAGGUGGCGGggCCGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.