miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24698 5' -55 NC_005264.1 + 3476 0.68 0.831944
Target:  5'- gGCGauggGCUUgCCGCCGCaCgCGGCGGGGg -3'
miRNA:   3'- -CGUa---CGAAaGGUGGCG-GgGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 3976 0.69 0.805646
Target:  5'- gGUAUGCUguuaGCCGCUUCGGCGGc- -3'
miRNA:   3'- -CGUACGAaaggUGGCGGGGCCGUUuu -5'
24698 5' -55 NC_005264.1 + 4367 1.08 0.003689
Target:  5'- aGCAUGCUUUCCACCGCCCCGGCAAAAc -3'
miRNA:   3'- -CGUACGAAAGGUGGCGGGGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 7933 0.65 0.934676
Target:  5'- cGCGUccacGCgucgUCCACgGCCgCGGCGu-- -3'
miRNA:   3'- -CGUA----CGaa--AGGUGgCGGgGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 12019 0.72 0.615566
Target:  5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3'
miRNA:   3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5'
24698 5' -55 NC_005264.1 + 15349 0.68 0.854963
Target:  5'- uGCGUGCggaaccucugCCACacacuaGCCCCGGUg--- -3'
miRNA:   3'- -CGUACGaaa-------GGUGg-----CGGGGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 24347 0.66 0.912486
Target:  5'- gGCGggGCauauccCCGCCGCUCUGGCAu-- -3'
miRNA:   3'- -CGUa-CGaaa---GGUGGCGGGGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 24643 0.65 0.934676
Target:  5'- cGCAUGCUUaauccCCACgGUUCUGGCc--- -3'
miRNA:   3'- -CGUACGAAa----GGUGgCGGGGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 27889 0.67 0.879255
Target:  5'- uCGUGuCUggCCAgCGUCUCGGCGAGGg -3'
miRNA:   3'- cGUAC-GAaaGGUgGCGGGGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 30075 0.74 0.533283
Target:  5'- cGUcgGCg--CCGCCGCgCCCGGaCAGAAu -3'
miRNA:   3'- -CGuaCGaaaGGUGGCG-GGGCC-GUUUU- -5'
24698 5' -55 NC_005264.1 + 30847 0.68 0.848547
Target:  5'- cGCcgGUcggcCCACCGCCaCCGGCc--- -3'
miRNA:   3'- -CGuaCGaaa-GGUGGCGG-GGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 33507 0.66 0.906321
Target:  5'- -aGUGCgcgUCGCUGCgCCCGGUAGGc -3'
miRNA:   3'- cgUACGaaaGGUGGCG-GGGCCGUUUu -5'
24698 5' -55 NC_005264.1 + 36976 0.72 0.619734
Target:  5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3'
miRNA:   3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5'
24698 5' -55 NC_005264.1 + 37860 0.71 0.678001
Target:  5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3'
miRNA:   3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5'
24698 5' -55 NC_005264.1 + 38088 0.66 0.9295
Target:  5'- cCGUGCUUccUUgGCC-CCCCGGgAAGAa -3'
miRNA:   3'- cGUACGAA--AGgUGGcGGGGCCgUUUU- -5'
24698 5' -55 NC_005264.1 + 38108 0.69 0.787285
Target:  5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3'
miRNA:   3'- cguACGAAAGGUGGCGGggCCGUuuu -5'
24698 5' -55 NC_005264.1 + 39131 0.66 0.924077
Target:  5'- cGCG-GCg--CCACuCGCCCCGacGCAGGu -3'
miRNA:   3'- -CGUaCGaaaGGUG-GCGGGGC--CGUUUu -5'
24698 5' -55 NC_005264.1 + 39533 0.73 0.552553
Target:  5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3'
miRNA:   3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5'
24698 5' -55 NC_005264.1 + 40740 0.68 0.856546
Target:  5'- cGCG-GCagagUUCACgGCCUCGGCAAAu -3'
miRNA:   3'- -CGUaCGaa--AGGUGgCGGGGCCGUUUu -5'
24698 5' -55 NC_005264.1 + 43549 0.68 0.823356
Target:  5'- uGCA-GCUgcccagCCACCGCgagcaaCCGGCGAGu -3'
miRNA:   3'- -CGUaCGAaa----GGUGGCGg-----GGCCGUUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.